EY684594

Overview
NameEY684594
Unique NameEY684594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2883 contig Csv1_Contig2883:121..988. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY684594 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.412e-27
Identity = 59/164 (35.98%), Postives = 93/164 (56.71%), Query Frame = 2 
Query:   14 IDHELSDQHRSKYYDLCCSQNSFLHDHLLKSINCKLAAEIITQTVNIAEAIRACNLST-SRADYEIWDKTLKGFELLGMNVGFLRARLNRLMSLAFESEESEVSKRLREVSAEQARAXXXXXXXXXXXXXXXXTMGRLDSELESLKVKAEKHELKFQEEANAPW 502
            ID +  D  R  YY+LCC+Q SFLH HLL+ ++  L   +I +T+NIAE IRAC   T S+ D+ IW KTL+ F+LLGMNV FL  R++ ++ L  +  +     +  E+  E++RA                 + ++D+E+E ++     H++  ++ A APW
Sbjct:  332 IDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAFLLKRVDDILGLPEQPRDPSECSKYNELKLERSRAGEKVKALESMMLTVKDVLKKIDAEMEEMESSVRNHDIALRKIATAPW 495
The following BLAST results are available for this feature:
BLAST of EY684594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1341_ORYSJ2.412e-2735.98B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684594 ID=EY684594; Name=EY684594; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGCTATTGACCATGAGCTCTCTGATCAACATAGGAGTAAAT
ACTATGACCTCTGCTGCTCTCAGAATTCCTTTCTGCATGACCATCTACTC
AAGAGCATTAACTGTAAATTGGCTGCTGAAATAATCACCCAGACTGTCAA
CATTGCAGAGGCCATTAGAGCTTGCAACCTTTCCACCTCTCGAGCTGATT
ATGAGATTTGGGACAAAACTTTGAAGGGATTTGAGCTGTTGGGAATGAAT
GTTGGATTCTTACGTGCTCGATTAAACAGGTTGATGAGTCTTGCTTTTGA
ATCAGAGGAGTCTGAGGTATCAAAAAGGCTTAGAGAAGTGAGTGCAGAGC
AAGCTCGTGCAGAAGAGGAGATGAGAAGTCTTGAATTGAAACTCTTGAGA
TTGAAAGAGACAATGGGAAGGCTTGACTCCGAGTTAGAGTCACTGAAGGT
AAAAGCTGAGAAGCATGAGCTTAAGTTTCAGGAGGAGGCTAATGCTCCTT
GGTGACTAGATACTTTGTGTTTAACAATGACTGTTGTTTGTTAGGATAAN
GAAATATTTCTCATAATATATTATTGCTGTTGTTGTTTCTATTCTAATTA
ATGTTGGTTATTAGGTGACCGTGGCCGGCCAGCGAAACCTGGGGATTGGA
TCAGATTGAACTTTGTTCCAACCGTCCCGATGATAAACGGGGGACATACA
CGGAAAGTTACCTAGAAAAGAAAGGACACACCGAAAACAGCAGAAAAAGA
ACGACACGCACGACAACACCAAACCACGGGGCGGCCCCGCCCGAAAGAGA
GCAACGCTGACCCCCCCGGCGCCCCACGCGCCACAGCTCCTTCCCTCGAA
GTCCACCAAACATGCGAA
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