EY684500

Overview
NameEY684500
Unique NameEY684500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1037
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684500 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.749e-23
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 3 
Query:   57 SVDPTFMEALPEDLLAEVLASQQASSVQP-NLRTTFC**YXXXXXXXXXXXXXXIVLAQQIAQGLAHHGEGQPVDMDNASVIATFPADLCEEVLLTSSEADLSVLPSSLLAEASSIK 404
            ++DPTF+EALPEDL AEVLASQQA SVQP                          VLAQQ AQ +    +GQPVDMDNAS+IAT PADL EEVLLTSSEA L+ LP  LLAEA  ++
Sbjct: 2592 AIDPTFLEALPEDLRAEVLASQQAQSVQPPTYEPPSVDDIDPEFLAALPPEIQREVLAQQRAQRMLQQSQGQPVDMDNASIIATLPADLREEVLLTSSEAVLAALPPPLLAEAQMLR 2708
[Close]
BLAST of EY684500 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 7.997e-23
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 3 
Query:   57 SVDPTFMEALPEDLLAEVLASQQASSVQP-NLRTTFC**YXXXXXXXXXXXXXXIVLAQQIAQGLAHHGEGQPVDMDNASVIATFPADLCEEVLLTSSEADLSVLPSSLLAEASSIK 404
            ++DPTF+EALPEDL AEVLASQQA SVQP                          VLAQQ AQ +    +GQ VDMDNAS+IAT PADL EEVLLTSSEA L+ LPS LLAEA  ++
Sbjct: 2608 AIDPTFLEALPEDLRAEVLASQQAQSVQPPTYEPPPVDDIDPEFLAALPPDIQTEVLAQQRAQRMVQQSQGQAVDMDNASIIATLPADLREEVLLTSSEAVLAALPSPLLAEAQMLR 2724
The following BLAST results are available for this feature:
BLAST of EY684500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL2_ARATH2.749e-2356.41E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH7.997e-2356.41E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-G08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684500 ID=EY684500; Name=EY684500; organism=Citrus sinensis; type=EST; length=1037bp
CCACGCGTCCGCGGACGCGTGGGGAATAATGAGGGTCTTGGTGCTAGTGC
CATTGATCAGTTGATCCTACTTTCATGGAGGCATTACCTGAGGACTTGCT
GGCAGAAGTGCTAGCTTCCCAGCAAGCTTCGTCTGTTCAACCTAACTTAC
GCACCACCTTCTGCTGATGATATTGATCCTCAGTTTTCAGCTGCTCTTCC
TCCTGATATCCGAGCATAGTTTTGGCCCAACAGATAGCACAGGGGTTGGC
TCATCACGGAGAAGGACAGCCAGTTGACATGGATAATGCTTCAGTTATTG
CAACTTTTCCTGCTGATTTATGTGAAGAGGTACTTTTGACTTCTTCAGAA
GCTGATTTGTCCGTGCTGCCTTCTTCATTACTTGCTGAAGCTTCATCTAT
CAAGGGTCTCAGGCAAGAGTCATTCGGACCTGCAGTCTTTTTGGAGGAAA
TAATGAAGAAAGTAAAAAAACCAACAGTGATGGAAAAGGGTGGTTGGGGT
TACAATAAGTAAAAAAGAAGCTTCTGCTATTGCAAAAACCTTGAATGGAA
GGAAAATTAAATACACCCCCTTCAGAATGCAAAGCTTGAAAACCCCTGAC
CCGACTTTATCAAATAAATCAACTACCAGAAACGACTCAAAAGGGCAACC
TTGAGAAAGGCACTTGCTGGTATCCCGGGGGAATTTCATTAACCCCGGAA
AGAAAAAAGAAACCCCCTGGTTTAATTTGGCTCAAAGACAAAATTATAAA
AAATGAACTCTTACCCACATGGATTCCCCTCAAGCGCGAGTGCTAAGAAA
AAAAAAAAAAATAAAAAATAAAAGCCTTTTTGTCTTTTTCTGGCTTAGTG
AGGACATCCTGGAGGAATAGAAACCCATATAACTATGGCGATATTTGCAG
AAAAATTTTATAAAACCCCACGCCATATGGATAGAGAGGACCACAGGAGA
AAACGTCACAATGAACAGAGTTAGTGGGAGGAATGTACACATTTATAAAT
TGACAACGAATTTATTAAAATGAAAAAAAACACAATA
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