EY684489

Overview
NameEY684489
Unique NameEY684489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.636e-32
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGG 232
            LRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGG
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGG 140          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.033e-31
Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGG 232
            LRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGG
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGG 140          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            +N  HCP+VNIDKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GG C
Sbjct:   67 KNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGAC 145          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            +N  +CP VN+D+LW++VP++ K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGG C
Sbjct:   65 KNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGAC 141          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GG C
Sbjct:   64 LRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGAC 144          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDN--VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            +RN+++CP +N+ KLWS+V ++ + KA  D   V +IDV + GY+KVLGKG+LPE  P+VVKAKL + TAEK+IK+ GG C
Sbjct:   64 MRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGAC 143          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GG C
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGAC 144          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GG C
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGAC 144          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GG C
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGAC 144          
BLAST of EY684489 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGRC 238
            RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GG C
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGAC 144          
The following BLAST results are available for this feature:
BLAST of EY684489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
R27A2_ARATH4.636e-3284.4260S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH1.033e-3183.1260S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_TETTH9.070e-2061.2560S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_OSCBR2.639e-1955.1360S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI3.446e-1952.4460S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_EUPCR2.918e-1854.3260S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
RL27A_PONAB3.226e-1753.0960S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_PANTR3.226e-1753.0960S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
RL27A_HUMAN3.226e-1753.0960S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_RAT5.502e-1753.0960S ribosomal protein L27a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-F06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684489 ID=EY684489; Name=EY684489; organism=Citrus sinensis; type=EST; length=780bp
ACTCCGCAACAAATTCCACTGCCCCATCGTCAACATCGACAAGCTCTGGT
CCATGGTCCCACAAGATGTGAAAGCAAAGGCCAGCAAGGACAATGTTCCG
ATGATTGATGTCACTCAGTTCGGCTACTTTAAGGTTTTGGGCAAAGGTGT
TTTGCCGGAGAACCAGCCCGTCGTTGTCAAGGCCAAGCTCGTTTCTAAGA
CCGCTGAAAAGAAGATCAAAGAGGCTGGTGGGCGCTGTTGTGCTCACAGC
TTTAGGGTTTATTTTGGGAACTCTCCCCTTGTCTAGGGGATTTTGTTTTA
TTCTGGGATCTGTTGGAAATTATTTAAATCACAATGTTTTTTATCCTTTT
TTTTTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGG
GCCCGCCTCTAAAGAAACCAAGGTTTTACTTACCCGGGGTGGCGAAGTTC
TAATTTCTTTTTTAAGTGGGCCCCTAAAATTTTAATTTCCCTGGGGCCTC
CTTTTTACAACGTCTGGGCTGGGGGGAAACCCGGGGGGTTCCCCCAAATT
ATTCCCCCTTGGGACCCACTCCCCCCTTTTTTCCCCGGGGGGGGGAAAAA
AAGAAAAAAAAACCCCGAACCACAGATAACCCTTTTCCCCAAAGCTTGTG
AGCCCCACCCGGTAAAGGGGGGAAGGAGGAGACCACCCCCTCCTTAATGG
GGCGGGCCAAAAATAAAATGCCCGAGGGGGGGGGGGTGTTGGAGGGGAGG
GGATAAAAGCGCACCCCCGATACAGACATG
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