EY684484

Overview
NameEY684484
Unique NameEY684484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.865e-37
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   42 IGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAPQMNVPVPEGCTDPTAENFDHTA*SDDGSCQY 353
            IGK  V  +E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK A Q+N+PVPEGCTDP AENFD TA SDDG+C Y
Sbjct:  369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.243e-35
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAPQMNVPVPEGCTDPTAENFDHTA*SDDGSCQYPL 359
            ++GK  V  K+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAA Q+++PV +GCTDP A+N+D TA SDDGSC Y L
Sbjct:  366 NVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35
Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAPQM-NVPVPEGCTDPTAENFDHTA*SDDGSCQY 353
            +IGK  V  +E  P FEQP MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ A Q  N+PVPEGCTDP A+NFD TA SDDGSC Y
Sbjct:  359 NIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLY 464          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.170e-35
Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAPQM--NVPVPEGCTDPTAENFDHTA*SDDGSCQY 353
            +IGK  V  KE  P+FEQP MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG  A Q   NVPVPEGCTDP A N+D TA SDDGSC Y
Sbjct:  368 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.223e-34
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAPQMNVPVPEGCTDPTAENFDHTA*SDDGSCQY 353
            +IGK  V  ++   TFEQP MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK A Q  +PVPEGCTD  A+N+D TA SDDGSC Y
Sbjct:  358 NIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 462          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.873e-24
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 248
            SIGK  V  KE  PTFEQP MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  368 SIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.022e-21
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGK 251
            +I K  V  +E  PTF+QP MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYGK
Sbjct:  355 NISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.883e-21
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   39 SIGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 242
            +IGK  V  KE  PTFEQP MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  368 TIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 6.623e-21
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 3
Query:   45 GKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 245
            GK  V  KE  PTF+QP M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  372 GKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY684484 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 3
Query:   42 IGKSPVRLKEAAPTFEQPTMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 245
            IG   +   +  PTFEQP MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  373 IGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of EY684484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCA_ARATH3.865e-3772.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.243e-3565.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ6.170e-3567.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR6.170e-3570.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.223e-3465.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.873e-2478.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.022e-2170.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR3.883e-2172.06Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.623e-2171.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.130e-2072.06Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-E12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684484 ID=EY684484; Name=EY684484; organism=Citrus sinensis; type=EST; length=954bp
CCGGGGAATTCCCCGGGGTCGACCCACGCGTCCGTGGAAGCATTGGCAAG
AGCCCCGTGAGACTCAAGGAAGCAGCCCCAACATTCGAGCAACCAACGAT
GACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAGCAAG
AGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGCCGCT
CTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCTATGGCAA
AGCGGCCCCGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTA
CTGCAGAAAACTTTGATCACACTGCATAAAGTGATGATGGAAGCTGCCAA
TACCCGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCT
TAAGATGAGAGATATTAAAATAATATTGATGTATTTTCATTGGAGGTGCA
AACTAAAAGGAATTCCACAAATTTTGTGTTAGAACAAGAATCTCGAATCA
AATCTTAAAAAGGGCTCCTTCGTTGCCATGAAAAAGGAAAGAAAGACGGG
GGGCGGTTCTGAGAGGGAGCGAGATTAATTGAATCGGAATGATTGCGAAA
AAGATCATCAGCAGGGTACAGAGAATTAATTCAACGGGATCGTCCTTTAC
TCTATCGATGAGGGAAGAGAACTGGCGACTGACCGGAGAGGGAGGCGGGG
GGAAGGAGTCCCCCAGTCAGTGCGGAGGGGCGGAGAGGGGGGGCGGCAGC
AGAGGGACAAAGCCTGAGACGGGCGCGAGCACCGAACGGGTGGGAAGTCA
CAAGACCTCAGTGAACGCACATATCTCGGGGTGTGACACAGACAAGATCG
CGGGCTACTGTGGACACAGGATGAGACGAGGTAGAGAGCAGATATGGTGC
GCTGCACGGCGCGTGGACACGTGGTGCGACGGGGGGGTGGGGGGTGGCTT
GAAC
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