EY684475

Overview
NameEY684475
Unique NameEY684475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1016
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.592e-28
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 2
Query:  227 NGETNVIPELSDSISSTPLIPATKRLRHASAVSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVD--SHRNFPWTKITIEEPNFQSHYSTEAVDQHD*GMGSYSSRFCKFLK 610
            +G T+ +  L+  +  T +   TK     S  +KFKGVV QQNGHWGAQIYA+H+RIWLGTFKS  +AA AYD+A+I+LR  D  SHRNFPW+  T+ EP+FQ  Y+TEAV  +    GSY  +F  FL+
Sbjct:   15 SGLTDSVLSLTKRMKPTEVTTTTKPA--LSNTTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDANSHRNFPWSDFTLHEPDFQECYTTEAV-LNMIRDGSYQHKFRDFLR 141          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.365e-27
Identity = 64/121 (52.89%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  254 LSDSISSTPLIPATKRLRHASAVSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVD--SHRNFPWTKITIEEPNFQSHYSTEAVDQHD*GMGSYSSRFCKFLK 610
            L D   +  ++ ++ +   AS   K+KGVV QQNGHWGAQIYA+H+RIWLGTFKS  +AA AYD+A+I+LR  D  SHRNFPW+ IT+ EP+FQ+ Y+TE V  +    GSY  +F  FL+
Sbjct:    3 LDDEPENALVVSSSPKTVVASGNVKYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDANSHRNFPWSTITLNEPDFQNCYTTETV-LNMIRDGSYQHKFRDFLR 122          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.866e-17
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNFPWTKITIEEPNFQSHYSTEAVD 556
            S+FKGVVPQ NG WGAQIY  HQR+WLGTF  E +AA AYD AA R RG D+  NF  T    E     +H  +E VD
Sbjct:   60 SRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKDTTFEEEVEFLNAHSKSEIVD 137          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.416e-16
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  245 IPELSDSISSTPLIPATKRLRHASAVSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNFPWTKITIEEPNF-QSHYSTEAVD 556
            +P +    S+  ++ +      A   S++KGVVPQ NG WGAQIY  H R+WLGTF  E+ AA AYD AA+R RG D+  NFP    +  E  F  +H   E VD
Sbjct:   41 LPVVKGVDSADEVVTSRPAAAAAQQSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAAELAFLAAHSKAEIVD 145          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.415e-16
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNFPWTKITIEEPNF-QSHYSTEAVD 556
            SK+KGVVPQ NG WGAQIY  HQR+WLGTF  E +AA AYD A  R R  D+  NF   K+  +E +F  SH  +E VD
Sbjct:   60 SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFKDVKMDEDEVDFLNSHSKSEIVD 138          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.026e-16
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNF 490
            SKFKGVVPQ NG WGAQIY  HQR+WLGTF  E DAA AYD AA R RG D+  NF
Sbjct:   80 SKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNF 135          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.670e-15
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNFPWTKITIEEPN---FQSHYSTEAVD 556
            SK+KGVVPQ NG WGAQIY  HQR+WLGTF  +++AA +YD AA R RG D+  NF   K  +E+ +    ++H   E VD
Sbjct:   63 SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNF---KNVLEDGDLAFLEAHSKAEIVD 140          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.554e-15
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNF 490
            SK+KGVVPQ NG WGAQIY  HQR+WLGTF  E +AA AYD AA R RG D+  NF
Sbjct:   67 SKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNF 122          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.325e-14
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRNF 490
            SK+KGVVPQ NG WGAQIY  HQR+WLGTF  E++AA +YD A  R RG D+  NF
Sbjct:   70 SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNF 125          
BLAST of EY684475 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.122e-13
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  323 SKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDNAAIRLRGVDSHRN 487
            S++KGVVPQ NG WGAQIY  H R+WLGTF  E+ AA AYD AA+R RG D+  N
Sbjct:   65 SRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN 119          
The following BLAST results are available for this feature:
BLAST of EY684475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RAVL3_ARATH3.592e-2852.31AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL2_ARATH1.365e-2752.89AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL4_ARATH4.866e-1756.41AP2/ERF and B3 domain-containing transcription fac... [more]
Y1410_ORYSJ1.416e-1643.81AP2/ERF and B3 domain-containing protein Os01g0141... [more]
RAV1_ARATH2.415e-1655.70AP2/ERF and B3 domain-containing transcription fac... [more]
Y1934_ORYSJ7.026e-1671.43AP2/ERF and B3 domain-containing protein Os01g0693... [more]
RAV2_ARATH2.670e-1551.85AP2/ERF and B3 domain-containing transcription rep... [more]
Y5498_ORYSJ4.554e-1567.86AP2/ERF and B3 domain-containing protein Os05g0549... [more]
RAVL1_ARATH1.325e-1464.29AP2/ERF and B3 domain-containing transcription rep... [more]
Y1407_ORYSJ1.122e-1363.64Putative AP2/ERF and B3 domain-containing protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-E03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684475 ID=EY684475; Name=EY684475; organism=Citrus sinensis; type=EST; length=1016bp
CCACGCGTCCGAGCTTTAATTCGCCCTTGTTGAAAGACAGGTCGGCTAAA
TATGGCAAGATTTGCTTGTTTCCTCCCCTGGGAAAATTTGGCCATGATTT
CCTTGTACAGCACTTATTTGTTTGGTTCTGGGGAGCAACAACAGCAAGCA
GCTGCTTTTATTCGCTGCAGGTTAATCACTCAGACTCAGAATCATTATGG
AAGAAGAGATGTTGAGCATTATTTCAAATGGCGAGACGAATGTGATTCCA
GAATTGTCGGATTCAATTAGCAGCACTCCCTTGATTCCTGCAACCAAGCG
TTTGAGGCACGCAAGTGCAGTCTCAAAGTTCAAAGGTGTGGTACCACAGC
AAAATGGGCATTGGGGTGCTCAAATATATGCCAACCACCAACGGATATGG
CTTGGGACCTTCAAATCCGAAAAGGATGCTGCTATGGCTTATGATAATGC
TGCAATCAGGCTTAGGGGTGTGGACTCGCATAGAAATTTTCCATGGACGA
AGATCACTATTGAAGAGCCCAACTTTCAAAGTCATTACAGTACTGAAGCA
GTGGATCAACATGATTAGGGAATGGGTTCCTATTCATCTAGGTTTTGCAA
ATTTCTTAAAGGAGTCATTCTAAAAACTCTGGGAAAAAAAAGTTATTTTT
CACCCAAAATAAAAACCAGGGACTGGAGGGAAGGAAGAAGGTGAAGGGAA
ATCCTTCTCAAAAAGGAACTAAAACCCAAGTGAAGGTTGGGCCAAACTTA
AAAAAAACTTGGCCATCCCCCAAAAAATAAGGGTGTGCCAGGTACTTTCC
CCCCCAAATTTTCTGAAAAGGGGGGGAAAAAAAAATGGCAAAAAAATGAA
CAAGGGCAAAAAGAATTTTAGCCGACTAAGTTTTTTTCCCTTAGAAAAAA
GCTAAAGTAGAAATTTTGTGGGGAAATTTTTTCCCCACCATTTGATTGTT
GTGAAAAAAAAAAAAATACCAAAAAATTATTTTTGTGTTTTCCAAAAAAA
AAAGGGGAGGGGGGAA
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