EY684472

Overview
NameEY684472
Unique NameEY684472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.108e-32
Identity = 67/84 (79.76%), Postives = 69/84 (82.14%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            TFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  318 TFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 5.498e-32
Identity = 66/84 (78.57%), Postives = 68/84 (80.95%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            TFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  313 TFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.377e-32
Identity = 66/84 (78.57%), Postives = 67/84 (79.76%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            TFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  309 TFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.225e-31
Identity = 65/84 (77.38%), Postives = 68/84 (80.95%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            TFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  150 TFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.037e-30
Identity = 65/84 (77.38%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            TFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  322 TFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.290e-28
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   42 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 284
            AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  311 AEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.830e-27
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 287
            T AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  320 TLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.887e-26
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = 3
Query:   42 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 284
            AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  342 AEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 3
Query:   36 TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 284
            TFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  290 TFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of EY684472 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.450e-24
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 3
Query:   42 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 284
            AE+VN AFR++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  341 AEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
The following BLAST results are available for this feature:
BLAST of EY684472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
G3PA_SPIOL1.108e-3279.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH5.498e-3278.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC9.377e-3278.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL1.225e-3177.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA1.037e-3077.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC6.290e-2870.37Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE1.830e-2770.24Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA5.887e-2667.90Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE6.509e-2562.65Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL1.450e-2465.43Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684472 ID=EY684472; Name=EY684472; organism=Citrus sinensis; type=EST; length=498bp
CGAATTCTTTGGTTCGTTCAGGGAGTCCACTTATAACCTTCGCAGAAGAG
GTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCT
CTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATG
TATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATG
GTTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGT
TGTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACT
AAAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATT
TTTGGTTCCCCCATTTATTGTTCTGCGTCTTAAAATTTGTAGAATGTATA
ACACTATCTTATTTAGGGAACCTTTTTCCTTTGCCTGTCATTAATCTTTA
TGCAATTAAATTTTTACATTAGAGTTGAAAAAAAAAAAAAAAAAAACA
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