EY684465

Overview
NameEY684465
Unique NameEY684465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684465 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.666e-20
Identity = 83/194 (42.78%), Postives = 99/194 (51.03%), Query Frame = 2
Query:   56 SVDPTFMEALPEDLLAEVLASQQASSVQP-NLRTTFC**YXXXXXXXXXXXXXXIVLAQQIAQGLAHHGEGQPVDMDNASVIATFPADLCEEVLLTXXXXXXXXXXXXXXXXXHLSR------VQAKSRSDLQSFWRK**RR*KSKQ*WT---KGVGVTLGKRAASAIANSLERKEI*SIPSSDAMD*KPLIQL 607
            ++DPTF+EALPEDL AEVLASQQA SVQP                          VLAQQ AQ +    +GQPVDMDNAS+IAT PADL EEVLLT                  + R       QA+SR    S  R   RR       T   +GVGVT+G+R  S+ A+ L+ KEI   P  +A   K LI+L
Sbjct: 2592 AIDPTFLEALPEDLRAEVLASQQAQSVQPPTYEPPSVDDIDPEFLAALPPEIQREVLAQQRAQRMLQQSQGQPVDMDNASIIATLPADLREEVLLTSSEAVLAALPPPLLAEAQMLRDRAMRHYQARSRV-FGSSHRLNNRRNGLGYRLTGMERGVGVTIGQRDVSSSADGLKVKEIEGDPLVNADALKSLIRL 2784          
BLAST of EY684465 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 3.666e-20
Identity = 78/194 (40.21%), Postives = 98/194 (50.52%), Query Frame = 2
Query:   56 SVDPTFMEALPEDLLAEVLASQQASSVQP-NLRTTFC**YXXXXXXXXXXXXXXIVLAQQIAQGLAHHGEGQPVDMDNASVIATFPADLCEEVLLTXXXXXXXXXXXXXXXXXHLSRVQAKSRSDLQSFWRK**RR*KSKQ---------*WTKGVGVTLGKRAASAIANSLERKEI*SIPSSDAMD*KPLIQL 607
            ++DPTF+EALPEDL AEVLASQQA SVQP                          VLAQQ AQ +    +GQ VDMDNAS+IAT PADL EEVLLT                  + R +A S    +S       R  +++            +GVGVT+G+RA S+ A+ L+ KEI   P  +A   K LI+L
Sbjct: 2608 AIDPTFLEALPEDLRAEVLASQQAQSVQPPTYEPPPVDDIDPEFLAALPPDIQTEVLAQQRAQRMVQQSQGQAVDMDNASIIATLPADLREEVLLTSSEAVLAALPSPLLAEAQMLRDRAMSHYQARSSVFGSSHRLNNRRNGLGYNRLTGMDRGVGVTIGQRAVSSSADGLKVKEIEGDPLVNADALKSLIRL 2801          
The following BLAST results are available for this feature:
BLAST of EY684465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL2_ARATH3.666e-2042.78E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH3.666e-2040.21E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-D05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684465 ID=EY684465; Name=EY684465; organism=Citrus sinensis; type=EST; length=1029bp
CACGCGTCCGCGGACGCGTGGGGAATAATGAGGGTCTTGGTGCTAGAGCC
ATTGATCAGTTGATCCTACTTTCATGGAGGCATTACCTGAGGACTTGCTG
GCAGAAGTGCTAGCTTCCCAGCAAGCTTCGTCTGTTCAACCTAACTTACG
CACCACCTTCTGCTGATGATATTGATCCTCAGTTTTCAGCTGCTCTTCCT
CCTGATATCCGAGCATAGTTTTGGCCCAACAGATAGCACAGGGGTTGGCT
CATCACGGAGAAGGACAGCCAGTTGACATGGATAATGCTTCAGTTATTGC
AACTTTTCCTGCTGATTTATGTGAAGAGGTACTTTTGACTTCTTCAGAAG
CTGTTTTGTCCGTGCTGCCTTCTTCATTACTTGCTGAAGCTCATCTATCA
AGGGTCCAAGCAAAGAGTCGTTCGGACCTGCAGTCTTTTTGGAGGAAGTA
ATGAAGAAGGTAGAAGAGCAAACAGTGATGGACAAAGGGTGTTGGGGTTA
CATTAGGTAAAAGAGCAGCTTCTGCTATTGCAAATAGCTTGGAAAGGAAG
GAGATTTAAAGTATACCCTCTTCTGATGCAATGGATTGAAAACCCTTGAT
TCAACTTTTTACAAATTAACCCAGCCCACAAAAATGCCAAACTTAAAAGG
CCACACCCTTGGGAAGGATTTGGAGGGTATCCATGGGTCTTTCATAAATC
CATGGTGGGCCAAAAGGGAACCCCTTGGCCTAAAATTGTCTAAAAACCTA
GAATTCAAATAAAGTAATGCTCTTTCAGTTTTTGTTCCCTCAAAGACCCC
GGTCATAAGAAAAAAGAAAAAAAAAAAAAAAAGACCCGTTGGCCTTTTCT
CGCGCTGGGGTGAGGTATCCCGAGGGAAATAGTATCACCCAAAATCCAGG
GTCATTGTTTCTATATAAATTTTCACCAAAGACCTCCCTATGGGAGAGAG
AGCGCTAAATGTAATAAAAAACTTGTTAAAATATTGGAGGGGAGGGGTGG
TTTAACTTCCTTAATTCCTACATTTACTA
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