EY684464

Overview
NameEY684464
Unique NameEY684464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.984e-63
Identity = 110/137 (80.29%), Postives = 118/137 (86.13%), Query Frame = 1
Query:   61 MGVSSDPNLDGSDEQQKRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLFEWEQEQRILRP 471
            MG SSDP  DGSDEQQKRSEIYTYE+PWHIYAMNWSVRRDK YRLAI SLLEQYPNRVEIVQLD+S GEIR+DPNLSFEHPYPPTKTIFIPDKECQ+PDLLATSSDFLR+WRI+D+  RVELKS     +      P
Sbjct:    1 MGTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGP 137          

HSP 2 Score: 32.7278 bits (73), Expect = 1.984e-63
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  450 RTANTAAPLTSFDWNEAEPK 509
            + +    PLTSFDWNEAEP+
Sbjct:  130 KNSEFCGPLTSFDWNEAEPR 149          
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.168e-58
Identity = 101/137 (73.72%), Postives = 114/137 (83.21%), Query Frame = 1
Query:   61 MGVSSDPNLDGSDEQQKRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLFEWEQEQRILRP 471
            M  SSD   +GS+EQ KRSEIYTYE+PW IYAMNWS+RRDK YRLAI SL+EQYPNRVEIVQLD+S GEIR+DPNL FEHPYPPTKT FIPDKECQ+PDLLATSSDFLR+WRISD++ RVELKS    ++      P
Sbjct:    1 MVTSSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGP 137          

HSP 2 Score: 32.3426 bits (72), Expect = 5.168e-58
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  450 RTANTAAPLTSFDWNEAEPK 509
            + +  + P+TSFDWNEAEP+
Sbjct:  130 KNSEFSGPITSFDWNEAEPR 149          
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.196e-30
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  109 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVE 423
            KR EIY YE+PW +YAMNWSVR DK +RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLE 108          

HSP 2 Score: 31.187 bits (69), Expect = 1.196e-30
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  450 RTANTAAPLTSFDWNEAEP 506
            + ++  APLTSFDWNE +P
Sbjct:  115 KNSDFCAPLTSFDWNEVDP 133          
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.196e-30
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  109 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVE 423
            KR EIY YE+PW +YAMNWSVR DK +RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLE 108          

HSP 2 Score: 31.187 bits (69), Expect = 1.196e-30
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  450 RTANTAAPLTSFDWNEAEP 506
            + ++  APLTSFDWNE +P
Sbjct:  115 KNSDFCAPLTSFDWNEVDP 133          
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.894e-30
Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  109 KRSEIYTYESPWHIYAMNWSVRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSL 435
            ++  IYTY SPW IY ++WS R ++ +RLAI S LE Y NRV+++QL++ T +        FEHPYPPTK ++IPDK   +PDLLAT+ D+LR+W +    R ++LKSL
Sbjct:    2 EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEVV--CGFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSL 108          

HSP 2 Score: 28.8758 bits (63), Expect = 9.894e-30
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  468 APLTSFDWNEAEP 506
            APL+SFDWNE +P
Sbjct:  118 APLSSFDWNETDP 130          
BLAST of EY684464 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.040e-24
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   97 DEQQKRSEIYTYESPWHIYAMNWS-VRRDKNYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPD--KECQKPDLLATSSDFLRVWRISDEDRRVE 423
            D   +     TY+SP+ +YAM +S +R    +R+A+ S LE Y NR++I+  D  +  ++  PNLSFEHPYPPTK +F P   +     DLLA+S DFLR+W I+++   VE
Sbjct:    7 DSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVE 118          

HSP 2 Score: 35.039 bits (79), Expect = 4.040e-24
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  447 TRTANTAAPLTSFDWNEAEPK 509
            ++T+   APLTSFDWN+ EPK
Sbjct:  126 SKTSEFCAPLTSFDWNDVEPK 146          
The following BLAST results are available for this feature:
BLAST of EY684464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LWD1_ARATH1.984e-6380.29WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH5.168e-5873.72WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE1.196e-3053.33DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN1.196e-3053.33DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI9.894e-3049.54DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
TTG1_ARATH4.040e-2442.86Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684464 ID=EY684464; Name=EY684464; organism=Citrus sinensis; type=EST; length=1015bp
CCTCTCTTCATCAATAATATTCACAACCCATTTCGTAGTTGTTGAGTTGA
AGTGAAAGTAATGGGCGTGAGTAGTGACCCGAATCTCGACGGGTCGGACG
AGCAGCAAAAAAGATCGGAGATCTATACCTATGAGTCACCGTGGCACATC
TACGCCATGAACTGGAGCGTCCGTCGCGACAAGAATTACCGACTCGCTAT
CGCCAGCCTCCTCGAACAGTATCCGAACCGGGTCGAAATTGTTCAGCTGG
ATGATTCCACTGGCGAGATCCGTGCCGACCCCAACCTCTCTTTCGAACAC
CCGTACCCACCTACCAAAACCATTTTCATACCCGACAAGGAGTGCCAAAA
ACCCGACCTTTTGGCCACCTCCAGCGATTTCCTCCGCGTGTGGAGAATCT
CCGATGAGGACCGGCGCGTGGAGCTCAAGAGTTTGTTTGAATGGGAACAA
GAACAGCGAATACTGCGGCCCCGCTGACCTCCTTTGACTGGAACGAAGCG
GAACCGAAGGCGAATTGGGAACGTCTAGTATCGACACGACGTGTACGAAT
TTTGGGGATATCAGAGAGGAGAAAGCCGGCGAATACGCAACTTAATCGCC
TCCGAATAAAAGAGGGTTTTACAACATCGCGGGGGGGGGGGGGGGTCGGC
GTTTTTTCCCCCCCCTTCTCCCCTGGATGGGGCCCCGTATGAATTTTTCA
AATTTGCCGCCACAAGGAAAACCTCCCACAAACATTTTTCCAAAAGCTCC
CGAAACCGAAAACCCCCCGTTTGGGTCTGGGTTGGGGGTGGGAAACAACC
CGGACCCCCAAAATATAAAGGGGCGACCAAAAAAATAAGGGGCCCACGGC
GGAAGGGGGGGGGGGGCTTCCGCCAACATTTCCTCTTCTCCCACACCCCT
CTCCCGGGGGTAAGGAGGAGCCGTGACGAAGAAGCGGCTCACAATGTGGG
GCGAAAGGGGGAAAGACGGCCGGCCGTGAGGGGAGATGGTGGGGGCCCGC
CCCTTCCCTACCACG
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