EY684460

Overview
NameEY684460
Unique NameEY684460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length982
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684460 vs. ExPASy Swiss-Prot
Match: SOT1_SPIOL (2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.261e-38
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:   34 MFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 285
            MFTAFLSVASALG PP+  A+VL+F SNLMGGLTHYGIGSAPVFYGANYVPL +WWGYGF++SIVN+IIWLGVGG+WWK IGLW
Sbjct:  486 MFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
[Close]
BLAST of EY684460 vs. ExPASy Swiss-Prot
Match: YFLS_BACSU (Putative malate transporter yflS OS=Bacillus subtilis GN=yflS PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.915e-27
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   34 MFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 285
            M++AFL+V  A G PP   A+ LAF SNL G  THYG G+APVF+GA Y+P  KWW  GFI+SIV+II+WL +GG+WWK +G+W
Sbjct:  395 MYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478
The following BLAST results are available for this feature:
BLAST of EY684460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SOT1_SPIOL1.261e-3883.332-oxoglutarate/malate translocator, chloroplastic ... [more]
YFLS_BACSU2.915e-2759.52Putative malate transporter yflS OS=Bacillus subti... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-C11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684460 ID=EY684460; Name=EY684460; organism=Citrus sinensis; type=EST; length=982bp
CCGGGAATTCCCCGGGTCGAACCCCGCGTCCGCATGTTTACAGCCTTCTT
ATCTGTTGCTAGTGCTCTAGGCTGTCCACCATACTTTGTAGCCATGGTGC
TCGCCTTCTTTTCCAATCTCATGGGTGGTCTCACCCACTATGGCATCGGG
TCAGCACCTGTTTTCTATGGTGCCAACTACGTTCCCCTTGCCAAATGGTG
GGGATACGGATTCATCGTATCTATCGTCAACATCATTATCTGGCTTGGAG
TTGGTGGTGTTTGGTGGAAATTCATTGGTTTGTGGTAAAGAGGCTGTTAC
ATAAAAAAATTGCAGTTTTTCTGATTATTGTTGGCCTGCAGGTTAGTTTT
CCAACTGGCGGGTAACTTTTCTTATTGATTCTTTACCATAGAAATAATTA
TTTGGTGGAGACCTTGATTGGAGAAAACGGTATAGATCTATATGAGGTCT
ATTTATTTAGAGCGGGAAGTAAGGTTTGTATCTGAAATTTTGACGCCGCA
AAAAAAACTAACCTTCCGATTTATTGATTAAGTGATTATTTCAGTTTTGA
TGCCTGAATATCGCTTGTATTTTTTGCCAACCTTAACTTGGTTTTTTTTT
TATTTTGGGTCTCTTTTGAAGGGAATAAGGTTGTTCCTTAAAAAAAAAAA
AAAAAAGGGCGGCCCGCTCTAAAAGAATCCAAGTTTAAGTAACCCCTGCA
TGCCACCGTCAAACCTCTTTCAAATGTGGCCCCTAAAAATTATATTTCCC
TGGGGCCCTCGTTTTATAACACCGCCCGGGACGTGGAAAAACCCTGGGGG
TTTCCCAACATTAATACTCCCTTTTGGCACAACTCCTCCCTTTTTTCCCC
AGCTGGGGGTAAATAAAAATAAAAAAGGCCCCCCCACACATTTCCCCCTT
TCCCAAAAAATTTTTGTCCACACCCCGAAAAATGGAGAAAAAAGGGAGAA
ACCCCCCCCTCGTTGAAAATGGTGTCCTTAAT
back to top