EY684459
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.779e-42 Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 MKHNNV+P+GHF HWQNYVKTWFNQPA K RR +R AVKIFPRPTAGPLRPV G TLKYNM + G Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTG 71 HSP 2 Score: 77.7962 bits (190), Expect = 6.779e-42 Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459 FTLEEL AAGIP KLAPTIG+SLDHRR RSL+G+ S V LKT++A LV+FP+ + KAGD Sbjct: 74 FTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRA-RKVKAGD 136
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.954e-41 Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 MKHNNV+P HF HWQNYVKTWFNQPA K RR +R AVKIFPRPT+GPLRPV G TLKYNM + AG Sbjct: 1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAG 71 HSP 2 Score: 78.9518 bits (193), Expect = 1.954e-41 Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471 FTLEEL AGIP KLAPTIG+S+DHRR RSL+G+ S V LKT++A LVVFP+ S KAGD P+ Sbjct: 74 FTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRS-RQVKAGDSTPE 140
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 7.340e-41 Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 MKHNNV+P+GHF HWQNYVKTWFNQPA K RR +R AVKIFPRPTAGPLRPV G TLKYNM + G Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTG 71 HSP 2 Score: 74.3294 bits (181), Expect = 7.340e-41 Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459 FTLEEL +AGIP KLAPTIG+++DHRR RSL+G+ S V LKT++A LV+FP+ + KAGD Sbjct: 74 FTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRA-RKVKAGD 136
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.340e-41 Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 MKHNNV+P+GHF HWQNYVKTWFNQPA K RR +R AVKIFPRPT+GPLRPV G TLKYNM + G Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTG 71 HSP 2 Score: 75.0998 bits (183), Expect = 7.340e-41 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471 FTLEEL AAGIP KLAPTIG+++DHRR RSL+G+ + V LKT++ LV+FP+ + KAGD P+ Sbjct: 74 FTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRA-RKVKAGDSTPE 140
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.677e-37 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 MKHNNV+P+GHF W+NYVKT FNQPA+K RR +R N AVKIFPRPTAGP+RPV TL YNM + AG Sbjct: 1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAG 71 HSP 2 Score: 72.0182 bits (175), Expect = 2.677e-37 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471 FTLEEL AAGIP KLAPTIG+S+DH R RSL+G + V LKT++A LV+FP+ + + K GD Q Sbjct: 74 FTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCA-RTVKVGDSAQQ 140
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 8.663e-32 Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 72 HGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 +GHF HWQNYVKTWFNQPA K RR +R AVKI PRPTAG LRP+ G TLKYNM + +G Sbjct: 5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSG 67 HSP 2 Score: 66.6254 bits (161), Expect = 8.663e-32 Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQRN 477 F+LEEL AAGIP KLAPTIG+++DHRR RSL+G+ + V L+ + LVVFP+ AS LP RN Sbjct: 70 FSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR--ASRSRLVILPPRN 137
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.621e-26 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYN 242 ++ N+++P+GHF+ WQ +VKTWFNQPA K RR +R A FPRP AG L+P+ T+KYN Sbjct: 2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYN 66 HSP 2 Score: 67.0106 bits (162), Expect = 1.621e-26 Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 253 RLAVCFTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKT--------------SYASSKAGDFLP 468 RL FTLEEL AGIP K APT+G+++DHRR RSL+ + + V LKT+ A LV+FP+ S AS G+ LP Sbjct: 70 RLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLP 155
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.606e-22 Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3 Query: 51 KHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 K NN++P+GHF+ WQ +VKTWFNQPA ++RR +R A + PRP AGPLRPV T++Y+ + AG Sbjct: 3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAG 72 HSP 2 Score: 45.4394 bits (106), Expect = 3.606e-22 Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPK 429 FTL E+ AAG+ A TIG+++D RR +S++ + V LK + A L++FPK Sbjct: 75 FTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFPK 128
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.760e-21 Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 N+V+ H HF WQ VKTWFNQPA K RR +R A +I PRP +GPLRP+ T +YNM + +G Sbjct: 5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSG 72 HSP 2 Score: 50.0618 bits (118), Expect = 1.760e-21 Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFP 426 F+L+E+ AAG+ K A TIG+++DHRR S++G+ V LK ++A L++FP Sbjct: 75 FSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFP 127
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 2.279e-21 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260 N ++ + HF+ WQ V+TWFNQPA K RR +R A +I PRP AGPLRP+ T++YN + AG Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAG 73 HSP 2 Score: 53.5286 bits (127), Expect = 2.279e-21 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459 FTLEEL AAGI ++A TIG+++D RR RS + +H V LK + + L++FP+ ++ K GD Sbjct: 76 FTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPR-KVSAPKKGD 138 The following BLAST results are available for this feature:
BLAST of EY684459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684459 ID=EY684459; Name=EY684459; organism=Citrus sinensis; type=EST; length=1026bpback to top |