EY684459

Overview
NameEY684459
Unique NameEY684459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.779e-42
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            MKHNNV+P+GHF  HWQNYVKTWFNQPA K RR  +R   AVKIFPRPTAGPLRPV  G TLKYNM +  G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTG 71          

HSP 2 Score: 77.7962 bits (190), Expect = 6.779e-42
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459
            FTLEEL AAGIP KLAPTIG+SLDHRR  RSL+G+ S V  LKT++A LV+FP+ +    KAGD
Sbjct:   74 FTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRA-RKVKAGD 136          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-41
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            MKHNNV+P  HF  HWQNYVKTWFNQPA K RR  +R   AVKIFPRPT+GPLRPV  G TLKYNM + AG
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAG 71          

HSP 2 Score: 78.9518 bits (193), Expect = 1.954e-41
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471
            FTLEEL  AGIP KLAPTIG+S+DHRR  RSL+G+ S V  LKT++A LVVFP+ S    KAGD  P+
Sbjct:   74 FTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRS-RQVKAGDSTPE 140          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.340e-41
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            MKHNNV+P+GHF  HWQNYVKTWFNQPA K RR  +R   AVKIFPRPTAGPLRPV  G TLKYNM +  G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTG 71          

HSP 2 Score: 74.3294 bits (181), Expect = 7.340e-41
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459
            FTLEEL +AGIP KLAPTIG+++DHRR  RSL+G+ S V  LKT++A LV+FP+ +    KAGD
Sbjct:   74 FTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRA-RKVKAGD 136          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.340e-41
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            MKHNNV+P+GHF  HWQNYVKTWFNQPA K RR  +R   AVKIFPRPT+GPLRPV  G TLKYNM +  G
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTG 71          

HSP 2 Score: 75.0998 bits (183), Expect = 7.340e-41
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471
            FTLEEL AAGIP KLAPTIG+++DHRR  RSL+G+ + V  LKT++  LV+FP+ +    KAGD  P+
Sbjct:   74 FTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRA-RKVKAGDSTPE 140          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.677e-37
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            MKHNNV+P+GHF   W+NYVKT FNQPA+K RR  +R N AVKIFPRPTAGP+RPV    TL YNM + AG
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAG 71          

HSP 2 Score: 72.0182 bits (175), Expect = 2.677e-37
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471
            FTLEEL AAGIP KLAPTIG+S+DH R  RSL+G  + V  LKT++A LV+FP+ +  + K GD   Q
Sbjct:   74 FTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCA-RTVKVGDSAQQ 140          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.663e-32
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   72 HGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            +GHF  HWQNYVKTWFNQPA K RR  +R   AVKI PRPTAG LRP+  G TLKYNM + +G
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSG 67          

HSP 2 Score: 66.6254 bits (161), Expect = 8.663e-32
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQRN 477
            F+LEEL AAGIP KLAPTIG+++DHRR  RSL+G+ + V  L+  +  LVVFP+   AS      LP RN
Sbjct:   70 FSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR--ASRSRLVILPPRN 137          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.621e-26
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   48 MKHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYN 242
            ++ N+++P+GHF+  WQ +VKTWFNQPA K RR  +R   A   FPRP AG L+P+    T+KYN
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYN 66          

HSP 2 Score: 67.0106 bits (162), Expect = 1.621e-26
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  253 RLAVCFTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKT--------------SYASSKAGDFLP 468
            RL   FTLEEL  AGIP K APT+G+++DHRR  RSL+ + + V  LKT+ A LV+FP+               S AS   G+ LP
Sbjct:   70 RLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLP 155          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.606e-22
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:   51 KHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            K NN++P+GHF+  WQ +VKTWFNQPA ++RR  +R   A  + PRP AGPLRPV    T++Y+  + AG
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAG 72          

HSP 2 Score: 45.4394 bits (106), Expect = 3.606e-22
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPK 429
            FTL E+ AAG+    A TIG+++D RR  +S++ +   V  LK + A L++FPK
Sbjct:   75 FTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFPK 128          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.760e-21
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N+V+ H HF   WQ  VKTWFNQPA K RR  +R   A +I PRP +GPLRP+    T +YNM + +G
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSG 72          

HSP 2 Score: 50.0618 bits (118), Expect = 1.760e-21
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFP 426
            F+L+E+ AAG+  K A TIG+++DHRR   S++G+   V  LK ++A L++FP
Sbjct:   75 FSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFP 127          
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.279e-21
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++ + HF+  WQ  V+TWFNQPA K RR  +R   A +I PRP AGPLRP+    T++YN  + AG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAG 73          

HSP 2 Score: 53.5286 bits (127), Expect = 2.279e-21
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459
            FTLEEL AAGI  ++A TIG+++D RR  RS + +H  V  LK + + L++FP+   ++ K GD
Sbjct:   76 FTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPR-KVSAPKKGD 138          
The following BLAST results are available for this feature:
BLAST of EY684459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL132_BRANA6.779e-4273.2460S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL133_ARATH1.954e-4171.8360S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL131_BRANA7.340e-4173.2460S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL131_ARATH7.340e-4171.8360S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_ARATH2.677e-3767.61Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC8.663e-3266.6760S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW1.621e-2650.7760S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_SPOFR3.606e-2251.4360S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_SCHMA1.760e-2151.4760S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_ICTPU2.279e-2148.5360S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-C10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684459 ID=EY684459; Name=EY684459; organism=Citrus sinensis; type=EST; length=1026bp
CTGATAGAACCTGACATAGTCGTCTGCATTTCTCTCTGTAAACAGAAATG
AAACATAACAACGTTGTTCCTCATGGGCACTTTAATAATCATTGGCAGAA
CTATGTCAAGACTTGGTTCAACCAACCTGCTCTCAAATATCGACGACTAT
TCTCTCGTCACAATAATGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGG
CCACTTCGTCCCGTCGATCCTGGCCTGACTTTGAAATACAACATGATATT
ATCGGCTGGCAGTATGCTTTACTCTTGAGGAACTCTAGGCTGCTGGAATT
CCCACCAAACTGGCTCCGACTATTGGTGTTTCACTCGATCATCGACGCAC
GATCCGTTCTCTTGATGGTGTTCACTCTCCTGTTCCTACGCTCAAGACTT
GGGAGGCTTAATTGGTTGTTTTCCCAAAGACGAGCTACGCGAGTTCCAAG
GCTGGTGATTTCCTCCCCCAGAGGAATTGGGTACAGCGACACGAATTATC
ACGTACCATATTTTGCCCCTATGCTTCCATGAAAAGCCTACTGTCGCAGT
TTGTTAAAGGTTACTCAGGATATGTATGTCCTTTCTAGGGGGTTATGAAC
AAATTCCTTAATTCAGCTGTGGGAACCAACCGCCATTTTTTGGTGCCCGG
AATAAAAAATGCTGTCAAAAGCTTTAGAAAGGGAGAAAAAAAAAATTAAT
AAAACTTTGTTTAAGACAAACATTTTTGTAATGGTGGGACTGTTTTATTG
GACTTATTGAATAAAGGAGAATTTCCAACTCCGTTCGCTTTTAACGTCCT
CACAAATAGATAAATTTTTTTTTTCGAAAGGGTGGGGAAAATTTTTCTCG
GGTTTTTATCTTTTTTTTGGCACGGAAACCTTCATTTCCGTTTGGTTTGC
TTTTTATTTTTTTGTTTTTTTTTTTCTCTAAGAATTATAAATTATAAATG
TTGTTTGTGGGCGAACTTCTCCTATAATACATTTTTTATGTGGGGGCTAT
TTTTTTATATATAAAAAAAAAATATC
back to top