EY684453

Overview
NameEY684453
Unique NameEY684453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 7.908e-36
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 237
            D PHV RTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.142e-34
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.154e-33
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 237
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD++LL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIG KN
Sbjct:   83 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.266e-33
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD+ LL+QIKDGF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.184e-33
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.184e-33
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTDENLLS IKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.184e-33
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.069e-32
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD++LLSQIKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.069e-32
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of EY684453 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.069e-32
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 234
            D PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   82 DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of EY684453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
IF5A_MANES7.908e-3692.41Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL1.142e-3491.03Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_MEDSA2.154e-3387.34Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A_SENVE6.266e-3387.18Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A5_SOLTU8.184e-3384.62Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A3_SOLLC8.184e-3389.74Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_SOLLC8.184e-3384.62Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A4_SOLTU1.069e-3288.46Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC1.069e-3284.62Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.069e-3284.62Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-C03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684453 ID=EY684453; Name=EY684453; organism=Citrus sinensis; type=EST; length=1002bp
GATGCTCCCCATGTTACTCGCACTGACTATCAGCTGATTGATATATCCGA
AGATGGTTTTGTGAGCCTTTTAACTGAAACCGGAAACACCAAGGATGATC
TGAGGCTTCCTACCGATGAAAATCTGCTTAGCCAGATTAAAGATGGGTTT
GCTGAAGGAAAAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGGA
GCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCCC
ATGGCATTAGCTTTGGCTGATAGCAGGAGAACTCTTTCTTATGTTGCCAA
CATGGAGACTATCTACCATCCATGTCCACAACAAACTTCCATTAAGATAG
TATTTTGGCTGTGTATTAAAATATCGTCGTGCTTGTGATAAAAGAAGTGG
AAAGAAAGCAGGTGTCGTCAATCTCCTGTTGAACGAAATTTATGTTGACA
GCATCTCGGACTTATATATATTTTTACTATTTTATTAGAAGAAACAAAAA
GTAACAGAGAACTAAGACACATACAAGAGAGCACGTTACGCAAAATAAAA
AATATAAACAAAAAGGGGGGGGCCCCCCCTAAGGAACCAGCTTACTTACC
CCGTGCTTGGAACGTCATAACTCTCTTCTAATGGGGCCCCCTAAATTACA
TTCCGCGGGGCCCTCGTTTTTTAAGAGCCGGGGGGGGGGAAAAACCCCTG
GGGTTACCCCAAATTTTAACGCCTTTGGGACGCACTCCCCCCCTTTTCCC
CCGGCTGGGGAAAAATAAAAAAAAAGGGCCCCCCCCCGATTCCCCCCCTT
CCCCCCAAGTTTTGTGGGCCGCCCGTTAAGGGGAAAAAGGGGGAGGCCCC
CCCCGGTATCGGGGGCCCCTTAAACAGGCGGGGGGGGGGGGGGGGGGGGG
AAAACAATCTCCAAAAGAGAGAGCACATATCAATTTTGTTGTGTAGGAGA
CCCCAATTAGGGCCCCCCCCACGCTCTTTTTTTTGGTTTGTTTTTTTTTT
AC
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