EY684449

Overview
NameEY684449
Unique NameEY684449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.228e-30
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  104 LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP--KDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577
            L + ++PE+ R PL ELCLQIK+L LG I  FLS+ ++PP  EA+  +I  L E+ A++  EELTPLG HLA+LPV+  IGKM+LFG +F CL P+L+I+A LS+K PF+ P  K++  +  R +LA                T+SDH  +    + WEE
Sbjct:  616 LDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELA--------------KETRSDHLTVVNAFEGWEE 761          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.604e-30
Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 2
Query:  104 LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577
            L + ++PE+ R PL ELCLQIK+L LG I  FLS+ ++PP  EA+  +I  L E+ A++  EELTPLG HLA+LPV+  IGKM+LFG +F CL P+L+I+A LS+K PF+ P  +++  +  +  L  D            T+SDH  +    + WEE
Sbjct:  623 LDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKD------------TRSDHLTVVNAFEGWEE 768          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.271e-27
Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 2
Query:   92 YSLSLHNAKVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 475
            Y+  L   ++PE+QR+PL +LCL+IK+L   S   ++   S+ +EPP  +++  +   L ++GA+  DE LTPLG+HLA LPVDV IGK+MLFG IF CL P L+I+A L++KSPF+ P D+K+   + KL
Sbjct:  982 YNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSAHNLQSVFSRLIEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1112          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.660e-27
Identity = 63/122 (51.64%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481
            VPE+ R+PL ELCL I    LG  + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPFI P   K   + AK +L
Sbjct: 1006 VPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSL 1127          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.698e-27
Identity = 63/122 (51.64%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481
            VPE+ R+PL ELCL I   +LG  + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPF  P   K   + AK AL
Sbjct: 1007 VPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSAL 1128          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 8.239e-27
Identity = 61/131 (46.56%), Postives = 91/131 (69.47%), Query Frame = 2
Query:   92 YSLSLHNAKVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 475
            Y+  L   ++PE+QR+PL +LCL+IK+L   S   ++   S+ +EPP  +++  +   L ++GA+  DE+LTPLG+HLA LPVDV IGK+ML G IF CL P L+I+A L++KSPF+ P D+K+   + KL
Sbjct:  984 YNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1114          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.835e-26
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE-GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481
            VPE+ R+PL ELCL I    LG  + FLSKAL+PP+ + I+ A+S+L ++GA E    +LTPLG HLA LPV+V IGKM++FG IFGCL  + +++A ++ KSPF+ P  EK   + AK ++
Sbjct: 1002 VPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSPFVTPIGEKDRADLAKSSM 1123          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.505e-20
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577
            + PE+ RMPL ELCL  KLL+     I  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q     + A+L  K         + T SDH  L    Q W++
Sbjct:  779 QTPELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGTFSDHMALLRAFQAWQK 924          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577
            + PE+ RMPL ELCL  KLL+     I  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q     + A+L  K         +   SDH  L    Q W++
Sbjct:  764 QTPELLRMPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGAFSDHMALLRAFQAWQK 909          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 2
Query:   86 FCYSL-------SLHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 430
            FC++L       +L +   PEM R PL E+ L IKLL LG I  FLSKALEPP  +A+  A  +L E+  ++ ++ELTPLG  LA+LP++  +GKMM+ G +FGC + +++I A  SY S F
Sbjct:  776 FCFTLCSRARFQALEDNLTPEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGC-ADLMAIMA--SYSSTF 894          
The following BLAST results are available for this feature:
BLAST of EY684449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
DHX36_MOUSE1.228e-3045.00Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX36_HUMAN1.604e-3044.30Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX57_HUMAN1.271e-2747.33Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX29_MOUSE1.660e-2751.64ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN3.698e-2751.64ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX57_MOUSE8.239e-2746.56Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX29_XENLA1.835e-2650.00ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
YTDC2_MOUSE1.505e-2039.10Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
YTDC2_HUMAN9.755e-2038.46Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
MLE_DROME9.755e-2045.90Dosage compensation regulator OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-B11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684449 ID=EY684449; Name=EY684449; organism=Citrus sinensis; type=EST; length=964bp
CCGGGGAATTTCCCGGGGTCGACCCCACGCGTCCGCGGACGCGTGGGTCA
CACTACTCTTGATCACTTGATATTTCTCCTGCAACTTTTGTTATTCTTTG
TCTCTCCACAATGCCAAGGTTCCTGAGATGCAGCGGATGCCTCTGGTTGA
GTTGTGTTTACAAATTAAGTTACTTTCTCTAGGACGCATAAAGATATTTC
TATCCAAGGCGTTAGAACCTCCTAAGGAAGAAGCTATTACTACTGCAATT
TCAGTATTGTATGAGGTTGGTGCTATTGAAGGGGATGAGGAATTGACCCC
TCTTGGCCATCATTTGGCCAAACTTCCTGTTGATGTATTGATTGGAAAGA
TGATGCTCTTTGGTGGAATATTTGGTTGCTTATCTCCCATTCTCTCTATA
TCAGCTTTTCTTAGCTACAAATCACCATTTATTTATCCCAAGGATGAGAA
GCAAAATGTTGAAAGAGCTAAATTGGCTCTATTAACTGATAAGCTAAAGG
GATTAAGTGATTCAAATGACAGTTCAACGCAATCTGACCATCCTGGATTG
GATGGTGGCATACAGAAATGGGAAGAAAATATGGCTCAAAAGAGGAAATA
AAGGCCGCCCAGCAGTTTCTGGGCGTAAATACTTTTTAAGCAGTTCTTTT
ATTGTACATGATAAGAAAAAATAAGGATACGGTTTGGAAAATTTGCTGGG
GAAAATTTGGAATGGATTAATTCTTTCCAAACAAAATTCCAAATGGGGGG
AAAAAAAAAAAGGAAAAACCTTTGAACATTGGTTTTTTCTGAAAAAAACC
CAAAAGGGTTAAATTATGGTTAGGAAAACACATTCCCCAATTGGGGGAAG
GGAAAAAATAATGGGGGCGGGGCCTGGAACCCCCTTAAGGGGGGGTGTGC
CCCCGTGAGAAAAGGGGGATTTGTGGGGGGGAGTTGGTTCCTTTAAAACA
TCCTTTATTAAAAA
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