EY684449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.228e-30 Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 2 Query: 104 LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP--KDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577 L + ++PE+ R PL ELCLQIK+L LG I FLS+ ++PP EA+ +I L E+ A++ EELTPLG HLA+LPV+ IGKM+LFG +F CL P+L+I+A LS+K PF+ P K++ + R +LA T+SDH + + WEE Sbjct: 616 LDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELA--------------KETRSDHLTVVNAFEGWEE 761
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.604e-30 Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 104 LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577 L + ++PE+ R PL ELCLQIK+L LG I FLS+ ++PP EA+ +I L E+ A++ EELTPLG HLA+LPV+ IGKM+LFG +F CL P+L+I+A LS+K PF+ P +++ + + L D T+SDH + + WEE Sbjct: 623 LDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKD------------TRSDHLTVVNAFEGWEE 768
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 1.271e-27 Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 2 Query: 92 YSLSLHNAKVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 475 Y+ L ++PE+QR+PL +LCL+IK+L S ++ S+ +EPP +++ + L ++GA+ DE LTPLG+HLA LPVDV IGK+MLFG IF CL P L+I+A L++KSPF+ P D+K+ + KL Sbjct: 982 YNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSAHNLQSVFSRLIEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1112
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.660e-27 Identity = 63/122 (51.64%), Postives = 88/122 (72.13%), Query Frame = 2 Query: 119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481 VPE+ R+PL ELCL I LG + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPFI P K + AK +L Sbjct: 1006 VPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSL 1127
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 3.698e-27 Identity = 63/122 (51.64%), Postives = 88/122 (72.13%), Query Frame = 2 Query: 119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481 VPE+ R+PL ELCL I +LG + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPF P K + AK AL Sbjct: 1007 VPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSAL 1128
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 8.239e-27 Identity = 61/131 (46.56%), Postives = 91/131 (69.47%), Query Frame = 2 Query: 92 YSLSLHNAKVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 475 Y+ L ++PE+QR+PL +LCL+IK+L S ++ S+ +EPP +++ + L ++GA+ DE+LTPLG+HLA LPVDV IGK+ML G IF CL P L+I+A L++KSPF+ P D+K+ + KL Sbjct: 984 YNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1114
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.835e-26 Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE-GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 481 VPE+ R+PL ELCL I LG + FLSKAL+PP+ + I+ A+S+L ++GA E +LTPLG HLA LPV+V IGKM++FG IFGCL + +++A ++ KSPF+ P EK + AK ++ Sbjct: 1002 VPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSPFVTPIGEKDRADLAKSSM 1123
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.505e-20 Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 2 Query: 116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577 + PE+ RMPL ELCL KLL+ I FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q + A+L K + T SDH L Q W++ Sbjct: 779 QTPELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGTFSDHMALLRAFQAWQK 924
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20 Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577 + PE+ RMPL ELCL KLL+ I FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q + A+L K + SDH L Q W++ Sbjct: 764 QTPELLRMPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGAFSDHMALLRAFQAWQK 909
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20 Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 86 FCYSL-------SLHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 430 FC++L +L + PEM R PL E+ L IKLL LG I FLSKALEPP +A+ A +L E+ ++ ++ELTPLG LA+LP++ +GKMM+ G +FGC + +++I A SY S F Sbjct: 776 FCFTLCSRARFQALEDNLTPEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGC-ADLMAIMA--SYSSTF 894 The following BLAST results are available for this feature:
BLAST of EY684449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684449 ID=EY684449; Name=EY684449; organism=Citrus sinensis; type=EST; length=964bpback to top |