EY684445

Overview
NameEY684445
Unique NameEY684445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1012
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.830e-30
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ P ++
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALF 64          

HSP 2 Score: 23.8682 bits (50), Expect = 2.830e-30
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  502 GRTVNPGNGSWKVFW 546
            GRTVNP NG+  + W
Sbjct:   73 GRTVNPVNGAVGLLW 87          

HSP 3 Score: 23.483 bits (49), Expect = 2.830e-30
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  468 ALFQALLDEACG 503
            ALFQ+LL EACG
Sbjct:   62 ALFQSLLYEACG 73          
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.681e-30
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QRP ++
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALF 64          

HSP 2 Score: 25.0238 bits (53), Expect = 3.681e-30
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  502 GRTVNPGNGSWKVFWGR 552
            GRTVNP NG+  + W R
Sbjct:   73 GRTVNPVNGAVGMLWTR 89          

HSP 3 Score: 23.483 bits (49), Expect = 3.681e-30
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  468 ALFQALLDEACG 503
            ALFQ+LL EACG
Sbjct:   62 ALFQSLLFEACG 73          
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.970e-29
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQRP ++
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALF 64          

HSP 2 Score: 23.8682 bits (50), Expect = 2.970e-29
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  502 GRTVNPGNGSWKVFW 546
            GRTVNP NG+  + W
Sbjct:   73 GRTVNPVNGAIGMLW 87          

HSP 3 Score: 23.483 bits (49), Expect = 2.970e-29
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  468 ALFQALLDEACG 503
            ALFQ+LL EACG
Sbjct:   62 ALFQSLLYEACG 73          
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.114e-21
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   RPG++
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIF 66          
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.657e-21
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  RP ++
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIF 66          

HSP 2 Score: 21.1718 bits (43), Expect = 7.657e-21
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  468 ALFQALLDEACG 503
            A+F++LL EACG
Sbjct:   64 AIFRSLLYEACG 75          
BLAST of EY684445 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.951e-19
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  170 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPGMY 361
            +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  RP ++
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIF 66          

HSP 2 Score: 21.9422 bits (45), Expect = 3.951e-19
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 1
Query:  475 FRLCWTKPVGRTVNPGNGSWKVFW 546
            FR    +  GR VNP +GS  + W
Sbjct:   66 FRSLLYEACGRIVNPVDGSVGLMW 89          
The following BLAST results are available for this feature:
BLAST of EY684445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH2.830e-3089.06LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH3.681e-3089.06LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD37_ARATH2.970e-2984.38LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD41_ARATH1.114e-2170.31LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD40_ARATH7.657e-2167.19LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD42_ARATH3.951e-1959.38LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684445 ID=EY684445; Name=EY684445; organism=Citrus sinensis; type=EST; length=1012bp
CTCATTCCACTATTGGCTCTCCCCTTTCCGCAGCAGTCGGCCAAAGCAAT
CAAACAACCTTAATAATTACTCTCCAAATCCTTGCGTTTATGTAATAGCT
TTTCTTTTCTTTTTTTTACCCTTTCTCTTTAAGGATAAAGAAGAACGACA
AAAGACAAGAAGCTGAGAGATGAGTTGCAACGGATGCCGAGTTTTGCGAA
AAGGATGCAGCGAGTCGTGTATTTTACGTCCTTGTTTACAGTGGATCGAG
AGTCCTGAATCCCAAGGCCACGCTACTGTGTTCGTCGCCAAATTCTTTGG
CCGTGCTGGCCTCATGTCCTTCATCTCGGCTGTCCCTGAATCCCAGCGTC
CTGGTATGTACATATTTTTACATATGTATAATGTCATTAGGGCTTTATTT
TTATTTTAATTTTGTCTGGGTTTTAAGTAAATATCCCATTTCCCTGTTCT
TGGCTTTTGTTACTGCAGCGTTGTTTCAGGCTTTGTTGGACGAAGCCTGT
GGGCCGAACTGTGAATCCGGGGAATGGGAGCTGGAAGGTCTTTTGGGGGC
GGGGGAACGGGGAAGGTTTGCCCAGGTGGCCGGGGAAACTGGCCCCCGAG
GCGGACCCGTTGGCAGTCGGGGGCCGAAGCTTCCCAAGAGCTGAGGGGGG
ATTCGCCCGACCCCAGTTGCGTACAAGGGTTACGGAAACCTGAAATGGAC
TTGGCACGGAAAAGGGTCGAGGTTGGAAGGGGAGGGGGCCGCCTTCCTAA
TGTCCTCAAGGGGAAGATTGCAGGATGCTCCAGGAATCCGGGGCGTGGTC
GCCGCGGTAATATCGTGGTTGGACAGAGGAATGAAAAGTATGAAACAATG
AAGAAGGATAGAGGTGAAAAAGAATTTGGGGGACCATATATGTGTGGGGT
CGGCGAGACAAGAGGGGTATACAGTGCGGGAACGGCTCGCTCGGGTGGCA
CCGGGTCCAAGGGGGGCGGTACGAGACAGTAGGAATAGAAGGGCGAAGAC
GTATATGCGATT
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