EY684443

Overview
NameEY684443
Unique NameEY684443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684443 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.802e-40
Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1
Query:  145 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIV 522
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIV
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIV 130          
BLAST of EY684443 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.407e-31
Identity = 76/105 (72.38%), Postives = 84/105 (80.00%), Query Frame = 1
Query:  214 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIV 522
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIV
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIV 138          
BLAST of EY684443 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.061e-24
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  196 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIV 522
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+V
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLV 113          
BLAST of EY684443 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.626e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  313 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 429
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of EY684443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH1.802e-4066.93Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL3.407e-3172.38Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.061e-2458.72Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA4.626e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-B04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684443 ID=EY684443; Name=EY684443; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGATCGCCGCTAAGCCTGTTCTATTTCTTGCAAAAATTTAT
CATAATCCAGGAACTCAAAAACTCCATCATCCATCAAGGCATCAACCAGA
ACACAAAAAAGAAGGAAAAAGAGGGGGAAAAAAGAAAAATGGCAGCCTCA
TCCTCCTTGTTCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTC
ACCCTCCACCATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCA
AAACCTCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGC
GGCATTAAAGCTGAGCTGAGCACACCACTTGTCATCAGCCTCAGCACTGG
CCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGA
ACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAA
GCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGA
CCCAGTTGGCTTTAACATTGTTTGATGTTCTTGCTTGGGGGTTCCCATTT
GGGCCATATTTGTCGCTTAAATACTTCTGGGCCACCTCCAGCAACGGCTT
ATGATCCCAATTCCTTTGGGTGAATTTGGTAATTGGACCGGCTCTCTTTG
GCCCCCTTTTAGTTTCCTTAATTTCCCAAGGGTTGCGCTTTGTAAAATTA
AAAAAAAATTTTCCCAACCATTAAATGGAAGGAAAACCAAAAAATGAAAA
CCTTGGCTTTTTTTCCCGTTTTTTAAACGGGGGAGGTTTTTCTCCTTGTT
CCCCCCTTTGGCGAGAAAAAAAAAAAATATAAACAGAAAAAACAAAGGAT
TTTGGCAACAAATGGTGGGCCTCATAATTGGGTTTTTCTTGGAAAATTCC
ACAACTTCCAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCAACCTCCATA
AAGGAAATAACAAGCAGTATAACATCAGGGGGAGGATATGCGCCAA
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