EY684425

Overview
NameEY684425
Unique NameEY684425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684425 vs. ExPASy Swiss-Prot
Match: RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.684e-42
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 3 
Query:   33 EVKKFNQFDDKTSPFISTVNKQPPPVVKRATICSNFAKPTTSSDLDEYQSFPE--TQTKSKLQNLVDLVMWRDVSKSAFVFGIGTFXXXXXXYATDLNISFISVISYLGLIYLAVIFLYRAIICRGVIDIDDSSYV-LGEGEAIWLLKLILPYLNE 491
            E+KKF+QF ++TSP  S+V K  PPV+KRAT   + A P ++S  D +    +  T ++SKLQ+LVDLVMWRDVS+S  VFG GTF      YA DLN SFISV++Y+GLIYL ++F+ +++I RG+++ +    V + E +   +L+LI+PYLNE
Sbjct:  167 EIKKFSQFQNRTSPSPSSVRKISPPVIKRATSVYS-APPNSTSSTDRFAEQEDNFTHSQSKLQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAYMGLIYLGLMFVLKSLIHRGMVEEERHKVVGVREEDVKRMLRLIMPYLNE 321

HSP 2 Score: 51.2174 bits (121), Expect = 3.684e-42
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 2 
Query:  506 LKQLFSGDPATTMKLGVLLFVLAKSGSSINLLEK*LKWGLFWEFPWTKKSCSSYSPAFWEANGKIW 703
            L+ LFSGDP+TT+K+GV+LFVLA+ GSSI L     K+G    F    K   SYS  F  A G  W
Sbjct:  326 LRALFSGDPSTTLKMGVVLFVLARCGSSITLWNL-AKFGFLGAFT-IPKIFISYSTHF-SAYGNFW 388
The following BLAST results are available for this feature:
BLAST of EY684425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RTNLS_ARATH3.684e-4248.72Reticulon-like protein B21 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-H10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684425 ID=EY684425; Name=EY684425; organism=Citrus sinensis; type=EST; length=857bp
CAAGAAAAAAGCCTGAACAGATTGTTGTTAATGAAGTGAAGAAATTTAAT
CAATTTGATGACAAAACAAGCCCTTTCATTTCAACTGTGAATAAGCAACC
TCCTCCAGTTGTAAAGAGAGCTACAATTTGCTCCAACTTTGCAAAACCAA
CTACAAGTTCAGATTTAGATGAGTATCAGAGTTTCCCAGAAACCCAAACT
AAATCCAAGTTACAGAATTTAGTGGATTTAGTAATGTGGAGAGATGTATC
AAAATCAGCGTTTGTTTTTGGGATTGGAACATTTATTATAATCTCATCCT
CTTACGCCACAGATCTCAATATCAGCTTTATTTCTGTGATTTCTTATCTG
GGTTTGATTTATCTTGCTGTCATCTTTCTGTACAGAGCCATTATTTGCAG
GGGAGTCATAGATATAGATGATTCGAGTTATGTTCTGGGAGAAGGAGAAG
CAATTTGGTTATTAAAACTGATTCTTCCTTACCTAAATGAGTTTCCTTTT
GAAGCTTAAAGCAACTTTTTTCTGGGGATCCTGCTACTACCATGAAGTTG
GGAGTGCTTCTGTTTGTTTTGGCTAAAAGTGGCAGCTCCATAAACCTCCT
GGAAAAATGATTAAAGTGGGGCCTTTTTTGGGAGTTTCCTTGGACCAAAA
AGTCTTGCTCTTCTTACTCCCCCGCATTTTGGGAAGCTAACGGTAAAATT
TGGGAATTCCAACCCTTTTCTGGAAGCAAGGGGAATCCTTGCGCTCTAAA
AAAAAGCCCGGGGCCGGTTGGCTTTTTTACCCCTCGAATGGAAAATTGGG
CCCCCAAGGATCCCCCCCGCCAAAGGGGAGCATATCAGGGCTATATGTGG
GCGCCCC
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