EY684417

Overview
NameEY684417
Unique NameEY684417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  220 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  165 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  233 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  237 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
The following BLAST results are available for this feature:
BLAST of EY684417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB29_MAIZE3.938e-18100.00Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC3.938e-18100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL3.938e-18100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC3.938e-18100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ3.938e-18100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA3.938e-18100.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ3.938e-18100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA3.938e-18100.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY6.717e-1897.62Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY6.717e-1897.62Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-G12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684417 ID=EY684417; Name=EY684417; organism=Citrus sinensis; type=EST; length=943bp
CCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTA
GAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGC
CTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTA
GTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTAT
TTCAACTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
AAAAAAAAAAAATAATTGAAAAAAAAGGGGGGCCCCCCCTATAAAAAAAA
AATTAAAAGAAGGGGGGGGGAGAAACACACAAAGACTCTTAAAAAAGGGA
ACCCAAAAATTATACACGGGGGCCGCCCTTTTTTACACATCTTGAGTATG
AGGAGAAAACCCCGGGGTTTATCCCCTTAATAAAAGCCCCGTGAGAAACA
ACGTCCCCCTTTTTAACAGTTAGGGAGAAAAAAAAAAAAAGAGACCCCCC
CCCACTATTACCCCCCCATCAAAAGTAGCGGCACCCGGCCTCGGGAGGGG
CACAACGGGGGGAAGCCCCTCCCTGAAGCACGACGCCAAAAAGAAAGCCG
CGGAGGGGGGGGGTGAGGGTGTAAAAACCACAACGTGGGAGAACACACTA
AAAATATTGTGCAAAGGCGCGAACCAATTAACAGTCCCCACACTTATATT
ATAATTATTTTATATTACATTATTCTTATGTTTTGCCCCCACATATGAGA
GGGGCGCGGGGCTTTGTATCATGCGATGAAAGATAGATACTAAAAAAGAA
TAGGGGGGGAGGATCCATCCTCTTTTAAAGAGGGCGGACACACAAAAAAA
ATATAAAATTGTATGTATTTTATAACTAGCTAACACCACCCAC
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