EY684406

Overview
NameEY684406
Unique NameEY684406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.117e-60
Identity = 116/163 (71.17%), Postives = 134/163 (82.21%), Query Frame = 3
Query:    3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQI-LGKLENLPLAEIIHARLAWEPFFILGIQVAF 488
            LAKN  G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+ RN++LDP KR+YP   F    LGL     KL+ L LAEI H+RLA   F I  +Q AF
Sbjct:  102 LAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYF--DPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAF 262          
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.887e-51
Identity = 108/173 (62.43%), Postives = 127/173 (73.41%), Query Frame = 3
Query:    3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQI-LGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGPSALW 518
            LAKN  G+++G  T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+ RNA+LD  KRLYP   F    LGL     K   L LAEI HARLA   F    +Q A    +GP   W
Sbjct:  101 LAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDP-LGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAA-ATGKGPLNNW 271          
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.004e-50
Identity = 111/173 (64.16%), Postives = 126/173 (72.83%), Query Frame = 3
Query:    3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGPSALW 518
            LAKN  GE++G  T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+ RNA+LD  KRLYP   F    LGL     K   L LAEI HARLA   F    +Q A    +GP   W
Sbjct:   98 LAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDP-LGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAA-ATGKGPLNNW 268          
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 84/160 (52.50%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    6 AKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQILGKLENLPLAEIIHARLAWEPFFILGIQ 479
            AKN+ G +  ++  T         L PY+EVFGL RFRECELIHGRWAML  LGA+  EA TGV+W +AGKVEL +G+SY G  LPFS+T LIWIEVI++G  E+ RN++ +P KR YP  VF    L  +   +   L  AEI HARLA   FF  G+Q
Sbjct:   97 AKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQ 255          
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 3
Query:   99 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGP 506
            L+R++E ELIH RWAML   G I  EAL    W  A +   + G  ++YLGQP+P+ +L T++ IE + I ++E+ R+ + D  K+ YP   F    LG  +   K E L + EI + RLA        +Q + Y   GP
Sbjct:   81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF--DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGP 218          
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   51 GELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGP 506
            G+    PL   T     +RF+E E+ H RWAML   G +  EAL    W  A +   L +G ++YLG P+P+ +L T++ IE + I + E  R  + DP K+ YP   F    LG  +   K E L L EI + RLA   F    +Q + Y   GP
Sbjct:   64 GDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF--DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGP 217          
The following BLAST results are available for this feature:
BLAST of EY684406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CB4C_ARATH8.117e-6071.17Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH6.887e-5162.43Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.004e-5064.16Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE6.258e-3652.50Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.270e-1237.14Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.834e-1135.90Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-F11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684406 ID=EY684406; Name=EY684406; organism=Citrus sinensis; type=EST; length=864bp
ACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCC
GGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCT
GCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGG
GTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAG
GATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACC
ACTTCCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTG
GGTACATAGAATATTCCAGAAATGCGAAGCTTGATCCACTGAAAAGACTA
TACCCCTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCCAAATCCTGGG
AAAGCTTGAAAATCTTCCATTGGCTGAAATCATTCACGCTCGTCTAGCAT
GGGAACCATTTTTTATCCTTGGAATCCAGGTTGCATTTTACTGGGAAAGG
GGCCCCTCAGCTTTGTGGCTCATTTAAACCATGAACCCATTTCAAAAAAT
TTACTGGCCAGGGTTCCTCTAAATTAATTAATTGTAAATTTTCGATAACA
TTCTTTCCCTTTGGATGGCTGCTACATTTGTAGACAAATTTTAGTATATT
ATAGGAACTTTGTCCAACCAATTTTCAACGAGTAAACTCACTTTTCTTTT
GAGGGGAAATAAAAGAAATTTCGTTTGGGTTCATTATTAGGTAAATTTAA
AACCCATAAAATTCCTTTAAAATTATATTTTTTTTTTTTTTTTTTTTAAA
TTTTTATAATAGTTCATTACAACGTGGGGTTTAATTTAGGGACGATGGAA
AAATGACAGACAAT
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