EY684406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 8.117e-60 Identity = 116/163 (71.17%), Postives = 134/163 (82.21%), Query Frame = 3 Query: 3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQI-LGKLENLPLAEIIHARLAWEPFFILGIQVAF 488 LAKN G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+ RN++LDP KR+YP F LGL KL+ L LAEI H+RLA F I +Q AF Sbjct: 102 LAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYF--DPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAF 262
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 6.887e-51 Identity = 108/173 (62.43%), Postives = 127/173 (73.41%), Query Frame = 3 Query: 3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQI-LGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGPSALW 518 LAKN G+++G T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+ RNA+LD KRLYP F LGL K L LAEI HARLA F +Q A +GP W Sbjct: 101 LAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDP-LGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAA-ATGKGPLNNW 271
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.004e-50 Identity = 111/173 (64.16%), Postives = 126/173 (72.83%), Query Frame = 3 Query: 3 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGPSALW 518 LAKN GE++G T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+ RNA+LD KRLYP F LGL K L LAEI HARLA F +Q A +GP W Sbjct: 98 LAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDP-LGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAA-ATGKGPLNNW 268
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36 Identity = 84/160 (52.50%), Postives = 104/160 (65.00%), Query Frame = 3 Query: 6 AKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGLQILGKLENLPLAEIIHARLAWEPFFILGIQ 479 AKN+ G + ++ T L PY+EVFGL RFRECELIHGRWAML LGA+ EA TGV+W +AGKVEL +G+SY G LPFS+T LIWIEVI++G E+ RN++ +P KR YP VF L + + L AEI HARLA FF G+Q Sbjct: 97 AKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQ 255
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12 Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 3 Query: 99 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGP 506 L+R++E ELIH RWAML G I EAL W A + + G ++YLGQP+P+ +L T++ IE + I ++E+ R+ + D K+ YP F LG + K E L + EI + RLA +Q + Y GP Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF--DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGP 218
BLAST of EY684406 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11 Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = 3 Query: 51 GELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYSRNAKLDPLKRLYPWWVF*SSWLGL-QILGKLENLPLAEIIHARLAWEPFFILGIQVAFYWERGP 506 G+ PL T +RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L T++ IE + I + E R + DP K+ YP F LG + K E L L EI + RLA F +Q + Y GP Sbjct: 64 GDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF--DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGP 217 The following BLAST results are available for this feature:
BLAST of EY684406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY684406 ID=EY684406; Name=EY684406; organism=Citrus sinensis; type=EST; length=864bpback to top |