EY684403

Overview
NameEY684403
Unique NameEY684403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL2_ARATH (Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.776e-73
Identity = 145/201 (72.14%), Postives = 160/201 (79.60%), Query Frame = 1
Query:   37 SNKDSCSFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFL-GRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            S   S SF+ EKSAKIFVAGHRGLVGSAIVRKL   GFTNL+LRTH+ELDLT QSDVESFFA EKP YVI+AAAKVGGIHANNTYPA+FI +NLQIQTNVI SA+ +GVKKLLFLGSSCIYPKFAPQPIPE+ALLTGPLEPTNEWYAIAKI GIK        +  QW  + G P NLYG ++ F P   +    P LMR+
Sbjct:    7 SEMKSGSFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAY--RLQHQWDAISGMPTNLYGQNDNFHP--ENSHVLPALMRR 203          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 1.082e-70
Identity = 139/193 (72.02%), Postives = 156/193 (80.83%), Query Frame = 1
Query:   61 LSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFL-GRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            +S+KSAKIFVAGHRGLVGSAIVRKL   GFTNL+L+THAELDLTRQ+DVESFF+ EKP YVI+AAAKVGGIHANNTYPA+FI +NLQIQTNVI SA+ +GVKKLLFLGSSCIYPKFAPQPIPE+ALLT  LEPTNEWYAIAKI GIK        I   W  + G P NLYGP++ F P   +    P LMR+
Sbjct:    1 MSDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAPQPIPESALLTASLEPTNEWYAIAKIAGIKTCQAY--RIQHGWDAISGMPTNLYGPNDNFHP--ENSHVLPALMRR 189          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.563e-68
Identity = 133/198 (67.17%), Postives = 160/198 (80.81%), Query Frame = 1
Query:   55 SFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYG-VKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQF---LGRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            SFL++K  K+FVAGHRGLVGSAI+R L+SLGFTN+++RTHAELDLTRQSDVE+FFAAE P YV++AAAKVGGIHAN+T+PA+FIA NLQIQTNV+D+A + G V+KLLFLGSSCIYPKFAPQPIPEN+LL+GPLEPTNEWYA+AKI GIK    +  +  IQ  F      P NLYGP + F P   +    P L+R+
Sbjct:   12 SFLADKGGKVFVAGHRGLVGSAILRHLVSLGFTNVVVRTHAELDLTRQSDVEAFFAAELPRYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALKCGSVRKLLFLGSSCIYPKFAPQPIPENSLLSGPLEPTNEWYAVAKIAGIK----MCQAYRIQHGFDAISAMPTNLYGPQDNFHP--ENSHVLPALIRR 203          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.594e-52
Identity = 113/210 (53.81%), Postives = 147/210 (70.00%), Query Frame = 1
Query:   10 SRSGLLMGDSNKDSCSFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYG-VKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFLGRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            +++G   GD +  + SFL +KSAK+F+AGHRG+VGSA+ RKL +LGFTN+++RT AELDL  Q+ VE+FFAAE P YVI+AAAKVGG+HA++  PAE++  NL+I  NV+D+A R G V+KLL L SS IYP  APQP PE+ALLTGP    +EWYAI KI GIK    +     +       P NLYGP   F PP++S    P L+R+
Sbjct:   13 AKAGDADGDGDAAAVSFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFTNVVVRTRAELDLACQAAVEAFFAAELPRYVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSEWYAIPKIAGIKMCQAVRAEYGLD-AIAAAPNNLYGPRHPF-PPEHS-HVIPALIRR 219          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.776e-48
Identity = 106/186 (56.99%), Postives = 128/186 (68.82%), Query Frame = 1
Query:   79 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFLGRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            +I+VAGH+G+VGSAI+R L S     +++    +LDLTRQ +VE F   EKP  VI+AAAKVGGI AN+T PA+FI  NL ++ NVI+ +FR GV+KLLFLGSSCIYPK+A QPI E ALLTGPLEPTNEWYAIAKI GIK            +     P NLYGP +KF    NS    P L+RK
Sbjct:   10 RIWVAGHKGMVGSAIIRSLASED-CEVIVADRQKLDLTRQEEVEKFLLKEKPHAVIMAAAKVGGILANDTMPADFIYQNLIMEANVIEGSFRSGVEKLLFLGSSCIYPKYAAQPIREEALLTGPLEPTNEWYAIAKIAGIKLCQAYRKQYGANF-ISAMPTNLYGPRDKFD--LNSSHVVPALIRK 191          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.511e-43
Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 1
Query:   79 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFLGRPKNLYGPHEKFSPPKNSPRGTPLLMRK 636
            ++F+AGHRG+VGSAI R+L   G   L+LRT  EL+L     V  FFA+E+   V +AAAKVGGI ANNTYPA+FI  N+ I++N+I +A +  V KLLFLGSSCIYPK A QP+ E+ LL G LEPTNE YAIAKI GIK     +      ++ +  P NLYGPH+ F P  ++    P L+R+
Sbjct:    5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV-MPTNLYGPHDNFHP--SNSHVIPALLRR 187          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: NOLK_AZOC5 (Nodulation protein nolK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nolK PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.286e-22
Identity = 64/178 (35.96%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   70 KSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQWQFLGRPKNLYGPHEKFSPPKN 603
            K  K+ + G RG+VG  ++      G+  ++  T  +LDL     VE +   + P  V+ AA  VGGIHAN   P  F+A N  +  NV+ S+FR  V  L+ L SSC+YP     P+ E  +L GP E TNE YA+AK  G+K    +       ++ L    NLYG  + F P ++
Sbjct:    3 KGKKLLITGGRGMVGRNLIACAARSGW-EIIAPTSVDLDLRNAEAVEQYIRRQLPDVVVHAAGVVGGIHANIADPIHFLADNAAMALNVVMSSFRSEVVTLINLSSSCMYPACIEGPLKECDILRGPFEVTNEGYALAKTVGLKICEYIDKLPNFNYKTL-IACNLYGVGDNFDPRRS 178          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL_DICDI (GDP-L-fucose synthetase OS=Dictyostelium discoideum GN=ger PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.830e-16
Identity = 58/184 (31.52%), Postives = 96/184 (52.17%), Query Frame = 1
Query:   61 LSEKSAK--IFVAGHRGLVGSAIVRKLLSLGFTN---LLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKITGIKNVPGLSDSI*IQW--QFLG-RPKNLYGPHEKF 588
            ++E ++K  + V G  GLVG  I + +     +N   + +R+ ++ DL  +    S+F   KP++VI  AA+VGG+ +N  Y  EF   N+ I  NV+     + V K +   S+CI+P     PI E  +  GP  P+NE YA AK    + +  L+ +   ++  +F    P N+YGPH+ +
Sbjct:    1 MTETTSKRTVLVTGGSGLVGKGIEKYVKETDKSNDVWVFMRS-SDCDLKSRESTRSYFEKIKPTHVIHLAARVGGLFSNMKYKVEFFRENIDINDNVLACCKEFNVVKCVSCLSTCIFPDKTTYPIDETMIHNGPPHPSNEGYAYAK----RMIDVLNRAYNEEYGCKFTSVIPTNIYGPHDNY 179          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL_DROME (Probable GDP-L-fucose synthetase OS=Drosophila melanogaster GN=Gmer PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 57/175 (32.57%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   79 KIFVAGHRGLVGSAI--VRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAK-ITGIKNVPGLSDSI*IQWQFLGRPKNLYGPHEKFSP 594
            K+ V G  GLVG A+  V K  S            + DLT  +  ++ FA EKP++VI  AA VGG+  N     +F+  NL I  NV+ +A   G  K++   S+CI+P     PI E  +  GP  P+N  Y+ AK +  ++N         +    +  P N++GPH+ ++P
Sbjct:    3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQNHAYHDKYGRVYTSVI--PCNIFGPHDNYNP 175          
BLAST of EY684403 vs. ExPASy Swiss-Prot
Match: FCL_CRIGR (GDP-L-fucose synthetase OS=Cricetulus griseus GN=TSTA3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.875e-14
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   73 SAKIFVAGHRGLVGSAIVRKLLS---LGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAK-ITGIKN-----VPGLSDSI*IQWQFLGRPKNLYGPHEKFS 591
            S +I V G  GLVG AI + +     L     +  +  + DLT  +  ++ F   +P++VI  AA VGG+  N  Y  +F   N+ I  NV+ SAF  G +K++   S+CI+P     PI E  +  GP   +N  Y+ AK +  ++N       G + +  I       P N++GPH+ F+
Sbjct:    7 SRRILVTGGSGLVGRAIQKVVADGAGLPGEEWVFVSSKDADLTDAAQTQALFQKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEVGTRKVVSCLSTCIFPDKTTYPIDETMIHNGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI-------PTNVFGPHDNFN 181          
The following BLAST results are available for this feature:
BLAST of EY684403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FCL2_ARATH6.776e-7372.14Putative GDP-L-fucose synthase 2 OS=Arabidopsis th... [more]
FCL1_ARATH1.082e-7072.02GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
FCL1_ORYSJ6.563e-6867.17Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
FCL2_ORYSJ6.594e-5253.81Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
Y4AF_RHISN5.776e-4856.99Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
FCL_ECOLI2.511e-4352.15GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
NOLK_AZOC59.286e-2235.96Nodulation protein nolK OS=Azorhizobium caulinodan... [more]
FCL_DICDI5.830e-1631.52GDP-L-fucose synthetase OS=Dictyostelium discoideu... [more]
FCL_DROME1.299e-1532.57Probable GDP-L-fucose synthetase OS=Drosophila mel... [more]
FCL_CRIGR1.875e-1431.32GDP-L-fucose synthetase OS=Cricetulus griseus GN=T... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684403 ID=EY684403; Name=EY684403; organism=Citrus sinensis; type=EST; length=893bp
TGACTTCACAGTCGATCCGGATTACTTATGGGAGACTCAAACAAGGATTC
ATGTTCCTTCCTCTCCGAAAAATCCGCCAAGATCTTCGTCGCCGGCCACC
GCGGCCTAGTCGGCTCCGCCATCGTCCGGAAACTCCTCTCCCTAGGCTTC
ACCAATCTCCTCCTCCGCACCCACGCTGAGCTCGATCTCACTCGCCAATC
CGACGTCGAATCATTCTTTGCCGCCGAGAAACCTAGCTACGTCATCGTGG
CCGCCGCCAAAGTCGGGGGCATCCACGCCAACAACACTTACCCCGCCGAA
TTCATCGCCATCAACCTCCAAATCCAAACCAATGTCATCGACTCCGCCTT
CCGTTACGGCGTCAAAAAGCTCCTCTTTTTAGGATCCTCTTGCATTTACC
CCAAATTCGCCCCGCAGCCGATCCCCGAAAACGCCCTGTTGACGGGCCCC
TTGGAGCCGACGAATGAATGGTACGCTATAGCCAAAATAACTGGGATTAA
GAATGTGCCAGGCTTATCAGATTCAATATAAATTCAATGGCAATTTTTGG
GAAGGCCCAAAAATTTATATGGGCCCCATGAAAAATTTTCCCCCCCGAAA
AACTCCCCACGTGGTACCCCGCTTTTGATGAGGAAAATTTCCAACAAAAC
TAAAGGGAAAAGGGAGCTAAAGGAAAGGGGGGGGGGGGGGGGCACTGGGG
AGTCCCGTTTAAAGGGGATTTCTTAACCCGTTGAAAGATTTGGGGTTAAA
GGCGAGGGTTTTTTCTGGAGGGGAAAAATATAATAGGGGATTTAAAAATT
TTAAAAAGGTGGGGGGGGGGGGAAAGGAAAAGAGAAATATTTACAAAAAT
TTGGGGGAAGGGGGGGGGGAAAAAAAAACCAGGGGGGATTTTG
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