EY684395

Overview
NameEY684395
Unique NameEY684395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684395 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.221e-12
Identity = 32/78 (41.03%), Postives = 37/78 (47.44%), Query Frame = 2 
Query:    2 LPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKY 235
            LP+GLLDRSEIPEYL GEV G+                                      YGYDPFGL KKP++F+KY
Sbjct:   71 LPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKY 110

HSP 2 Score: 37.7354 bits (86), Expect = 1.221e-12
Identity = 36/117 (30.77%), Postives = 47/117 (40.17%), Query Frame = 3 
Query:  342 ADIRHMKLIHAQWAMLGGCWFHHS*SL*QVWCLTVGPEADWVQG*FAFFQIVAPFVSWICLWFC*GLFMQTGAHLLDGKTLK*FRKENPNQPWILRTWQKMYL*SGGIEIKKIQNGI 692
            A  +  +LIHA+WAMLG   F    +L   +    GPEA W                            +TGA LLDG TL  F K  P    +    + + L  GG E  +I NG+
Sbjct:  108 AKYQAFELIHARWAMLGAAGFIIPEAL-NKYGANCGPEAVW---------------------------FKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLL--GGAEYYRITNGL 194
The following BLAST results are available for this feature:
BLAST of EY684395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CB26_ARATH1.221e-1241.03Chlorophyll a-b binding protein CP26, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-E12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684395 ID=EY684395; Name=EY684395; organism=Citrus sinensis; type=EST; length=859bp
CTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCG
GAGAAGTTCCCGGAGAGTAAGATTGTCCTTCTTCTTCCCTTCAGGGCCTC
AGATGATTTTTCTTGAACATTGTTTAGTTGAATGTTTTTTAAAACATTAA
TACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTACGATCCTTTTG
GTCTCAGCAAGAAACCAGACGACTTCAGCAAGTATGTTAACTTAAGCTCT
ACATTTTTTTGTTGTATCTTTTTATGAAATCATCCGAAGAAACAGTTCAT
TGATTATTGGTTAAGAAATATATGGTTGGATTAATTTCATTGCAGATATC
AGGCATATGAAATTGATTCATGCACAATGGGCCATGCTTGGTGGCTGCTG
GTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCCTCACTGTGGGTC
CTGAAGCTGACTGGGTTCAAGGTTAATTTGCTTTTTTCCAGATCGTTGCT
CCTTTTGTGTCGTGGATTTGCTTATGGTTTTGTTAAGGCCTGTTTATGCA
GACTGGGGCTCATCTTCTTGATGGAAAAACATTGAAATAATTTCGAAAAG
AAAATCCCAATCAACCTTGGATTTTGCGGACATGGCAGAAAATGTATCTA
TGAAGCGGGGGCATAGAAATAAAGAAAATACAAAACGGGATTGGGTAATT
GTACTTTGGTCTGGGTTACTACTTAGAGGCACCTTTGATCTTTTATTTTT
TGGCGTGCAAATTTAATTTTTCCGGTTTTAAACTTATTTGGATTCAATAG
CCTATTCTAAAAAAATTGGAAAAGCTGGTGCAAATTTTTAAATTTTTAGA
TTTCTATGT
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