EY684385

Overview
NameEY684385
Unique NameEY684385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.220e-31
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   70 TRGALPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN*RAKKLQRYIVVEDKNQKSGLKTPL 468
            +  A+  YGVGSCGPRGFYGTIDVHLD E + A F+ TPE++LYS   +T+ SAIP F K G++I+ D GV   +Q G+ LSRS + YF  NDMD LQ  LE+      +AK +++++V+E     SG   PL
Sbjct:  123 SENAIRKYGVGSCGPRGFYGTIDVHLDLEKKTASFMKTPEAVLYSSAYATISSAIPSFSKIGDIIIVDRGVSQPVQVGVSLSRSRIYYFNHNDMDDLQRVLEQTQFKGSKAKIVRKFVVIEGLYYNSGTIAPL 255          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_BOVIN (Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.594e-28
Identity = 65/145 (44.83%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   64 PRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG +T+ SAIP + K+G+++  D+   + IQ GL  SRS +  F  NDMD L+  L+    ++     +A+  +R+I+VE     +G   PL E
Sbjct:  115 PRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDKAACFAIQKGLQASRSDIKVFNHNDMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_MOUSE (Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.306e-28
Identity = 69/153 (45.10%), Postives = 93/153 (60.78%), Query Frame = 1
Query:   40 DFPGRPILPRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            +F G    PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG ST+ SAIP + K+G++I  D    + IQ GL  SRS +  FK ND+  L+  L+    ++     +A+  +R+IVVE     +G   PL E
Sbjct:  107 NFLGLLANPRVKAAAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTVASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_CRIGR (Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.306e-28
Identity = 68/153 (44.44%), Postives = 93/153 (60.78%), Query Frame = 1
Query:   40 DFPGRPILPRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            +F G    PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG ST+ SAIP + K+G+++  D    + IQ GL  SRS +  FK ND+  L+  L+    ++     +A+  +R+IVVE     +G   PL E
Sbjct:  107 NFLGLLANPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMRTEEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTVCPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_PONAB (Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.246e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   64 PRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG +T+ SAIP + K+G+++  D    + IQ GL  SRS +  FK NDM  L+  L+    ++     +A+  +R+IVVE     +G   PL E
Sbjct:  115 PRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_MACFA (Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.246e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   64 PRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG +T+ SAIP + K+G+++  D    + IQ GL  SRS +  FK NDM  L+  L+    ++     +A+  +R+IVVE     +G   PL E
Sbjct:  115 PRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: SPTC1_HUMAN (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.246e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   64 PRTRGA----LPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN----*RAKKLQRYIVVEDKNQKSGLKTPLGE 474
            PR + A    L  YGVG+CGPRGFYGT DVHLD E R+AKF+ T E+I+YSYG +T+ SAIP + K+G+++  D    + IQ GL  SRS +  FK NDM  L+  L+    ++     +A+  +R+IVVE     +G   PL E
Sbjct:  115 PRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: LCB1_YEAST (Serine palmitoyltransferase 1 OS=Saccharomyces cerevisiae GN=LCB1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.576e-22
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   55 PILPRTRGALPLYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN*RAKKL----QRYIVVEDKNQKSGLKTPLGE 474
            P+    +  +  YGVG+CGP GFYG  DVH   E  +A+F GT  S+LY        S +P F K+G++IVAD+ V   +QN L LSRSTV YF  NDM+SL+  L  +T    + +KL    +++IV E     SG   PL E
Sbjct:  163 PVKEVVKTTIKNYGVGACGPAGFYGNQDVHYTLEYDLAQFFGTQGSVLYGQDFCAAPSVLPAFTKRGDVIVADDQVSLPVQNALQLSRSTVYYFNHNDMNSLECLLNELTEQE-KLEKLPAIPRKFIVTEGIFHNSGDLAPLPE 305          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: LCB1_SCHPO (Serine palmitoyltransferase 1 OS=Schizosaccharomyces pombe GN=lcb1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.927e-20
Identity = 48/122 (39.34%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   94 GVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLERVTADN*RAKK--LQRYIVVEDKNQKSG 453
            G+G+CGP GFYGT D HL  E  IA F+G   +I+Y+    T+ S IP F K+G+++V DE  ++ IQ G+ +SR+T+ YFK N+M  L+  L+ +  D  +  +   +R+I+ E  ++  G
Sbjct:  158 GLGACGPPGFYGTQDKHLRLEKDIASFIGVERAIVYAQSFQTISSVIPAFSKRGDILVVDEACNFAIQKGIQISRTTIRYFKHNNMKDLERILQELEDDFVKHNRPLTRRFIITEGISENYG 279          
BLAST of EY684385 vs. ExPASy Swiss-Prot
Match: BIKB_META3 (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1419 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   91 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPCFCKKGNLIVADEGVHWGIQNGLYLSRSTVVYFKPNDMDSLQNTLER 378
            YG GS G R   G I+ H   E +IA+F GT  S++YS G +T    I   CKKG+LI++D+  H  I +G  LS+S V+ +   DMD+L + +E+
Sbjct:   61 YGFGSTGSRLTAGDIN-HQLLEHKIAEFKGTERSLIYSSGYATNVGVISALCKKGDLILSDKLNHASIIDGCKLSKSAVLIYNHCDMDNLIDLIEK 155          
The following BLAST results are available for this feature:
BLAST of EY684385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SPTC1_DICDI9.220e-3149.62Serine palmitoyltransferase 1 OS=Dictyostelium dis... [more]
SPTC1_BOVIN5.594e-2844.83Serine palmitoyltransferase 1 OS=Bos taurus GN=SPT... [more]
SPTC1_MOUSE7.306e-2845.10Serine palmitoyltransferase 1 OS=Mus musculus GN=S... [more]
SPTC1_CRIGR7.306e-2844.44Serine palmitoyltransferase 1 OS=Cricetulus griseu... [more]
SPTC1_PONAB1.246e-2745.52Serine palmitoyltransferase 1 OS=Pongo abelii GN=S... [more]
SPTC1_MACFA1.246e-2745.52Serine palmitoyltransferase 1 OS=Macaca fascicular... [more]
SPTC1_HUMAN1.246e-2745.52Serine palmitoyltransferase 1 OS=Homo sapiens GN=S... [more]
LCB1_YEAST1.576e-2242.36Serine palmitoyltransferase 1 OS=Saccharomyces cer... [more]
LCB1_SCHPO1.927e-2039.34Serine palmitoyltransferase 1 OS=Schizosaccharomyc... [more]
BIKB_META33.643e-1141.67Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-E01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684385 ID=EY684385; Name=EY684385; organism=Citrus sinensis; type=EST; length=953bp
TAAAACACAATGTCATTTTAGGGTCCGCGGTCGGGTCGGGATTTCCCGGG
TCGACCCATTCTTCCGCGGACGCGTGGGGCATTGCCCCTTTATGGTGTCG
GCTCTTGTGGACCTCGTGGCTTCTATGGAACAATAGATGTTCACCTTGAT
TGTGAGGCCAGAATTGCTAAGTTTCTTGGAACTCCTGAATCAATCCTCTA
TTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCCTGTTTCTGCAAAA
AAGGAAATCTCATTGTTGCTGATGAGGGAGTGCATTGGGGAATTCAAAAT
GGCCTTTATCTCTCTAGAAGTACAGTTGTCTACTTCAAGCCCAATGACAT
GGATTCTTTACAAAATACTTTGGAGAGGGTCACTGCTGATAACTAGCGGG
CTAAGAAACTACAACGCTACATTGTGGTTGAGGACAAGAATCAAAAATCT
GGGCTAAAAACGCCGTTGGGTGAGTATGATCATAATGCATGAGAACTACC
GGTTCCATGTTTTTCAGAAAGAGATAAACTCATTAGGTGGACTTTGGCAG
ATCTGGAATATGCGCTTCAGACCTTTAGTGGAATCTCAGGTGGACATGAT
ATATAATGTTCTTGTCCTATATAGGAACATGACTTGTCCACTTAAGGGGG
AATACTCCAGGAAAAGCAGCCCAGTCGCTATACCCCAAACCCGGAAACTT
TTTTTTCTGCATCTCATTGCCCCCCAAACCCTGCCAGTCGCGTCCACTTG
TAGCTATTGTCATCCCTTTGTAAATAAAACTGGTTTCGATAACAAATATA
ACAAAATTAGCTTTAGCCATTTTTCGTAATAGTGATTACGCTATATATTA
TGGGGGGATGTCTCTTTGCGATGATCACCAAATAGACTACCCTGTTTGTT
TTTTGTTACTCTCCAATGAACAGTCGGTATAGGGTGTCTAACGTGAAGTA
TGC
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