EY684383

Overview
NameEY684383
Unique NameEY684383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.004e-44
Identity = 79/118 (66.95%), Postives = 87/118 (73.73%), Query Frame = 2
Query:  137 CSLYS-PTKSHLGFFNNQRQLAVFYN--KRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRK 481
            C++Y+ PT +HLG   NQ    VF+N  +           R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGA EPPKGGNPDSNTLISDTTTVICLDD+HSLD+ GRK
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRK 119          

HSP 2 Score: 48.9062 bits (115), Expect = 7.004e-44
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 3
Query:  480 KKRGVTALDPKANNFDLMYEQVKGMKKWKCLLKSQFKIRSPVPWNPPELHTSP 638
            K   VTALDPKAN+FDLMYEQVK +K+ K + K  +   S +  +PPEL   P
Sbjct:  119 KVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGL-LDPPELIQPP 170          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.685e-41
Identity = 97/156 (62.18%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  152 PTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRKEKGCHCT*S*SQQF*SYV*TG*GHEKMEV-----SVEKPI*NPVTG 604
            PT SHLGF N ++QL  F+  +          R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGA EPP+GGNPDSNTLISDTTTVICLDDYHSLD+TGRKEKG       +  F         +E+++      +VEKPI N VTG
Sbjct:    9 PTTSHLGF-NQKKQL--FFCNKSAYKRVSFSSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLM------YEQVKALKEGKAVEKPIYNHVTG 154          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.706e-34
Identity = 88/166 (53.01%), Postives = 103/166 (62.05%), Query Frame = 2
Query:  122 SLNSPCSLYSPTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRKEKGCHCT*S*SQQF*SYV*TG*GHEKMEV-----SVEKPI*NPVTG 604
            SL SPC+    T  + GF  NQ    +F+  R               ++C+    Q IVIGLAADSGCGKSTFMRRLTSVFGGA EPPKGGNPDSNTLISDTTTVICLDDYHSLD+TGRKEKG       +  F         +E+++      ++EKPI N VTG
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNTRHGARTFQVSCAV--EQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLM------YEQVKAIKEGKAIEKPIYNHVTG 161          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  260 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRKEKGCHCT*S*SQQF*SYV*TG*GHEKMEVSVEKPI*NPVTG 604
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGA +PPKGGNPDSNTLISDTTTVICLDDYHSLD+ GRKE+        +  F   +       K  ++VEKPI N VTG
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRANDF-DLMYEQVKALKNGIAVEKPIYNHVTG 153          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.432e-28
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  275 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRKEKGCHCT*S*SQQF*SYV*TG*GHEKMEVSVEKPI*NPVTG 604
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLISD TTVICLDDYH LD+ GRK KG       +Q F   +       K   SV+KPI N V+G
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNF-DLMYNQVKALKEGKSVDKPIYNHVSG 139          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.545e-23
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  350 LTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDK 469
            LTSVFGGA EPP+GGNPDSNTLISDTTTVICLDDYHSLD+
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR 40          

HSP 2 Score: 43.5134 bits (101), Expect = 9.545e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 3
Query:  486 RGVTALDPKANNFDLMYEQVK 548
            RGVTALDP+AN+FDLMYEQVK
Sbjct:   40 RGVTALDPRANDFDLMYEQVK 60          
BLAST of EY684383 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  287 QTIVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDKTGRKEKG 490
            + ++IG+A DSGCGKSTF+RRLT +FG                  +  TVICLDDYHSLD+ GRK  G
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLDRQGRKAAG 57          
The following BLAST results are available for this feature:
BLAST of EY684383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KPPR_SPIOL7.004e-4466.95Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_MESCR8.685e-4162.18Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_WHEAT2.706e-3453.01Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH6.239e-3165.22Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE8.432e-2860.91Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_VITSX9.545e-2392.50Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
KPPR_SYNY39.366e-1150.00Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-D11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684383 ID=EY684383; Name=EY684383; organism=Citrus sinensis; type=EST; length=878bp
CCGGGAATTTCCCCGGGTCCGACCCACGCGTCCGCTGAAAGAATCCTAAA
ACGTTCATTTCTGCTCTAGCAGCAGCATCCCTCACCGAGCCAAAAAAAAA
AAAAGAAAGAAAATGGCCATTTCCCTCAACTCACCATGCTCTCTTTACTC
GCCAACAAAATCCCACTTGGGTTTTTTCAACAACCAAAGACAACTAGCGG
TTTTTTACAACAAGAGAAGCAGCAGCAGCAGCATCAGCAGCAAGCAGAGA
GGATGTCTTGTGATAACATGCTCAGCAGGTGACTCACAGACAATTGTGAT
TGGTCTGGCGGCAGACTCGGGGTGTGGCAAGAGCACGTTCATGAGGAGAC
TAACAAGCGTCTTTGGTGGAGCAACAGAGCCACCAAAGGGCGGCAACCCT
GACTCAAACACTCTCATCAGCGACACCACCACTGTGATTTGCTTAGATGA
TTATCACTCGCTTGACAAAACTGGAAGAAAAGAAAAGGGGTGTCACTGCA
CTTGATCCTAAAGCCAACAATTTTGATCTTATGTATGAACAGGTTAAGGG
CATGAAAAAATGGAAGTGTCTGTTGAAAAGCCAATTTAAAATCCGGTCAC
CGGTCCCCTGGAACCCCCCCGAACTCCATACAAGCCCCCCCCAAGAACCC
TTGTCTATGGAAAGGCTTGGCACCCCAATGGTAGAATGCCCCGGGTAGAA
AAAGCTCTTGGGACTTTAGTACTAATTTGGAACAATAACCAATGAGGGTA
AAATTTTGCATGGGAAAATTTCAAAAAAAAAATGGAAAAAAACGAAGGAA
ACCAGTCTTGGGAAAACCCATCAAGGCGGAATATTTGAAAACCCCAGAAA
GCCCAAAATTTTAGGAACCCTAAAATAT
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