EY684379

Overview
NameEY684379
Unique NameEY684379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 384.415 bits (986), Expect = 1.086e-113
Identity = 175/206 (84.95%), Postives = 194/206 (94.17%), Query Frame = 1
Query:    4 SYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLE 621
            +YGNGTANTALVYHHGKLLAL EADKPY +KVLEDGDLQTLG++DYDKRL HSFTAHPKVDP TGEMFTFGY+HTPPY+TYRVISKDG MHDPVPIT+S+PIMMHDFAITE YAIFMDLP++FRPKEMVKE K+I++FD TKKARFG+LPRYAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMV+G VKEKLE
Sbjct:  166 TYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVSGKVKEKLE 371          

HSP 2 Score: 48.1358 bits (113), Expect = 1.086e-113
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  606 QRKTRNFSNELYEMRFNLETGLASQKRFIGIPPVDFPR 719
            + K  NF NELYEMRFN++TG ASQK+ +    VDFPR
Sbjct:  367 KEKLENFGNELYEMRFNMKTGSASQKK-LSASAVDFPR 403          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 9.998e-112
Identity = 175/207 (84.54%), Postives = 191/207 (92.27%), Query Frame = 1
Query:    1 VSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLE 621
            VSYG GT NTAL+YHHGKLLALSEADKPY VKVLEDGDLQTLG+LDYDKRL HSFTAHPKVDP+T EMFTFGYAHTPPY+TYRVISKDG M DPVPIT+   +MMHDFAITENY+IFMDLPLYF+PKEMVK  KLIF+FD TKKARFG+LPRYAK+++ ++WFELPNCFIFHNANAWEE DEVVLITCRL+ PDLDMVNGAVKEKLE
Sbjct:  169 VSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGYAHTPPYVTYRVISKDGVMRDPVPITIPASVMMHDFAITENYSIFMDLPLYFQPKEMVKGGKLIFSFDATKKARFGVLPRYAKDDSLIRWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGAVKEKLE 375          

HSP 2 Score: 49.6766 bits (117), Expect = 9.998e-112
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  606 QRKTRNFSNELYEMRFNLETGLASQKRFIGIPPVDFPR 719
            + K  NF NELYEMRFN++TG ASQK+ + +  VDFPR
Sbjct:  371 KEKLENFKNELYEMRFNMKTGAASQKQ-LSVSAVDFPR 407          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 1.271e-105
Identity = 183/233 (78.54%), Postives = 198/233 (84.98%), Query Frame = 1
Query:    1 VSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLEISQMNCMK*DSTWKLA*LPKKDLSAS 699
            +SYG GT NTALVYHHGKLLALSEADKPYA+KV EDGDLQTLGMLDYDKRL HSFTAHPKVDP+TGEMF+FGYAHTPPYITYRVISKDG+MHDPVPIT+SDPIMMHDFAITENYA+FMDLPL FRPKEMVK   LIF+FD TKKARFG+LPRYAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL  P LD V G V+EKLE       +     K     +K LSAS
Sbjct:  167 LSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTPPYITYRVISKDGYMHDPVPITISDPIMMHDFAITENYAVFMDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEQHIRWFELPNCFIFHNANAWEEEDEVVLITCRLQNPKLDNVGGTVQEKLENFSNELYEMRFNMKTGEASQKKLSAS 399          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 8.235e-105
Identity = 179/233 (76.82%), Postives = 201/233 (86.27%), Query Frame = 1
Query:    1 VSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLEISQMNCMK*DSTWKLA*LPKKDLSAS 699
            VSYG+GTANTALVYHH KLLALSE DKPYA+KV EDGDLQTLGMLDYDKRL H+FTAHPKVDP+TGEMFTFGY+HT PY+TYRVISKDGFM DPVPIT+SDP+MMHDFAITENY+IFMDLPLYFRPKEMVK   LIF+FD TKKARFG+LPRYAK++  ++WFELPNCFIFHNANAWEEEDE+VLITCRL+ P+LD+V GAVKEKL+       +     K     +K LSAS
Sbjct:  165 VSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWEEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTGEASQKKLSAS 397          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.359e-43
Identity = 88/196 (44.90%), Postives = 124/196 (63.27%), Query Frame = 1
Query:    4 SYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLITCRLDKPD 582
            ++G G AN  LVY +G+LLA+SE D PY V++  +GDL+T+G  D+D +L+ +  AHPKVDP +GE+F   Y   + PY+ Y   S DG     V I +  P MMHDFAITEN+ +  D  + F+  EM++    +  +D  K ARFGIL +YA++ + +KW + P+CF FH  NAWE  E DEVV+I   +  PD
Sbjct:  241 AHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPDVEIQLDQPTMMHDFAITENFVVVPDQQVVFKLPEMIRGGSPV-VYDKNKVARFGILDKYAEDSSNIKWIDAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPD 435          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.766e-41
Identity = 87/194 (44.85%), Postives = 121/194 (62.37%), Query Frame = 1
Query:   10 GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLITCRLDKPD 582
            G G AN  LVY +G LLA+SE D PY VKV + GDL+T G  D+D +L+ +  AHPK+DP T E+F   Y   + PY+ Y   + DG     V I +  P M+HDFAITEN+ +  D  + FR  EM++    +  +D+ KK+RFGIL + AK+ + ++W E+P+CF FH  N+WE  E DEVV+I   +  PD
Sbjct:  303 GLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTMIHDFAITENFVVIPDQQVVFRLPEMIRGGSPV-VYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLWNSWEEPETDEVVVIGSCMTPPD 495          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.438e-40
Identity = 84/188 (44.68%), Postives = 118/188 (62.77%), Query Frame = 1
Query:    4 SYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLI 558
            S G G AN  LVY +G+LLA+SE D PY V+V +DGDL+T+G  D+D +L  +  AHPK+DP TGE+    Y     PY+ Y     DG   D V I +  P M+HDFAITEN  +  D  + F+ +EM++    +   D  K +RFG+LP++A + ++M W ++P+CF FH  NAWE+E   EVV+I
Sbjct:  242 SAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDKEKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVI 428          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.582e-39
Identity = 90/215 (41.86%), Postives = 131/215 (60.93%), Query Frame = 1
Query:   10 GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPI-TVSDPIMMHDFAITENYAIFMDLPLYFRPK--EMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEED--EVVLITCRLDKPD-----LDMVNGAVKEKLEI 624
            G G ANT+L +   +L AL E+D PYAV++ E GD++T+G  D+D +L  S TAHPK DP TGE F F Y   PP++TY      G     VPI +++ P  +HDFAIT+ +AIF ++ L  R    ++V E       D+ K  R G++P+YA +E++MKWFE+P   I H  NAW+E+D   VVLI   +   +     +D+V+ A+ EK++I
Sbjct:  233 GIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVH-ALVEKVKI 446          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.066e-39
Identity = 86/186 (46.24%), Postives = 113/186 (60.75%), Query Frame = 1
Query:   10 GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLI 558
            G G AN  LVY H +LLA+SE D PY V+V ++GDL+T+G  D+D +L  +  AHPK+DP T E+F   Y     PY+ Y   S +G     V I ++ P MMHDFAITEN+ +  D  + F+  +M    K    +D  K +RFGILPR AK+ ++M W E P  F FH  NAWE  E DEVV+I
Sbjct:  233 GTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKLSDMFL-GKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAWESPETDEVVVI 417          
BLAST of EY684379 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 80/188 (42.55%), Postives = 111/188 (59.04%), Query Frame = 1
Query:    4 SYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLI 558
            S+G G AN  LVY +  LLA+SE D PY V++  +GDL T+G  D++ +L  +  AHPK+DP  G++    Y     PY+ Y   S DG     V I + +P MMHDFAITEN+ +  D  + F+  EM+     +  +D  K +RFGIL + AK+   M+W + P CF FH  NAWE  E DE+V+I
Sbjct:  260 SHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEPTMMHDFAITENFVVVPDQQVVFKLTEMITGGSPV-VYDKNKTSRFGILDKNAKDANAMRWIDAPECFCFHLWNAWEEPETDEIVVI 446          
The following BLAST results are available for this feature:
BLAST of EY684379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_ARATH1.086e-11384.95Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA9.998e-11284.54Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PHAVU1.271e-10578.54Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA8.235e-10576.82Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED3_ARATH2.359e-4344.909-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH3.766e-4144.859-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_MAIZE5.438e-4044.689-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
CCD4_ARATH1.582e-3941.86Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH2.066e-3946.24Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_PHAVU2.526e-3742.559-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-D07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684379 ID=EY684379; Name=EY684379; organism=Citrus sinensis; type=EST; length=858bp
GTTTCATATGGAAATGGGACAGCTAATACAGCTCTTGTATATCACCATGG
GAAACTTCTAGCGCTCTCAGAGGCGGACAAACCATATGCCGTCAAAGTTC
TGGAAGATGGAGATCTGCAAACACTTGGTATGCTTGACTATGACAAGAGA
TTACAACATTCCTTTACTGCCCATCCAAAGGTTGATCCATACACTGGCGA
GATGTTTACCTTTGGCTATGCACACACACCACCATATATCACATACAGAG
TTATTTCAAAGGATGGTTTCATGCATGATCCTGTACCAATAACCGTATCA
GACCCCATCATGATGCACGACTTTGCTATTACTGAGAATTATGCTATTTT
CATGGATCTTCCGCTGTATTTCAGACCAAAGGAAATGGTGAAAGAAAACA
AGCTGATATTCACATTTGATGATACAAAGAAAGCTCGTTTTGGTATACTT
CCCCGATATGCAAAGAATGAGGCTCAAATGAAATGGTTTGAGCTTCCTAA
TTGCTTTATCTTCCATAATGCCAATGCTTGGGAGGAGGAGGATGAAGTGG
TTCTGATCACTTGCCGCCTAGACAAGCCGGATCTAGACATGGTCAATGGG
GCTGTCAAAGAAAAACTAGAAATTTCTCAAATGAACTGTATGAAATGAGA
TTCAACTTGGAAACTGGCCTAGCTTCCCAAAAAAGATTTATCGGCATCCC
GCCTGTTGATTTTCCCAGGGGGGAAATGATTGCTACACTGGCAGGGAACA
AAAAAATGGGAATGGGAACAATACTAAAAAAAACATTGCAAAAATTCCCC
GGGGATACCCCAATTTTGTTCTGCCGGGTGGAACCCAAACAAAAAAAAAA
CAAAGCTT
back to top