EY684377

Overview
NameEY684377
Unique NameEY684377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1
Query:   52 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            MVPLQD+YMQ RAEAL  VESTIHEL +IF QLAT+VSQQGEIAIRID+NM+DT+ANVEGAQ  L +YLNSISSNRW
Sbjct:  250 MVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRW 326          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: SYP31_ARATH (Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   55 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            VP Q++Y QSRA AL +VES I EL  IF QLAT+V+QQGE+AIRID+NMD+++ NVEGA+ ALL++L  ISSNRW
Sbjct:  240 VPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRW 315          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX5_DROME (Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   67 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            D+Y+Q RAE +QN+ESTI ELG IF QLA +V +Q EI  RID N+ D   N+E A G +LKY  S+S NRW
Sbjct:  375 DNYVQQRAETMQNIESTIVELGGIFQQLAHMVKEQEEIVERIDTNVADAELNIEAAHGEILKYFQSVSKNRW 446          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX5_RAT (Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   52 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            ++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  258 LIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX5_MOUSE (Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   52 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            ++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  258 LIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX5_HUMAN (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   52 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            ++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  258 LIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX5_BOVIN (Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   52 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            ++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  258 LIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: SED5_YEAST (Integral membrane protein SED5 OS=Saccharomyces cerevisiae GN=SED5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   73 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            Y+Q R  A++ +ESTI E+GN+F QLA++V +QGE+  RID N+DD   N+ GAQ  LLKY + I SNRW
Sbjct:  251 YLQERNRAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSNRW 320          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: STX3_CAEEL (Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   73 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 282
            Y Q+R+  +  +E +I ELG IF+QLA+LVS+QGE+  RID N++DT  N++ A   L++YL +IS NRW
Sbjct:  323 YAQARSNTMATIEGSISELGQIFSQLASLVSEQGEMITRIDSNVEDTALNIDMAHSELVRYLQNISKNRW 392          
BLAST of EY684377 vs. ExPASy Swiss-Prot
Match: SED5_SCHPO (Integral membrane protein sed5 OS=Schizosaccharomyces pombe GN=sed5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   67 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 279
            D+Y Q R  ++QN+ESTI ELG IF+QLA +VS+Q E   RID + DD ++N+  AQ  ++K+   +SSNR
Sbjct:  218 DTYSQQRMSSIQNIESTITELGGIFSQLAQMVSEQRETVQRIDMHTDDIVSNIGSAQREIVKFYERMSSNR 288          
The following BLAST results are available for this feature:
BLAST of EY684377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYP32_ARATH6.340e-2980.52Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
SYP31_ARATH2.853e-2165.79Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 ... [more]
STX5_DROME7.271e-1756.94Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2... [more]
STX5_RAT2.763e-1653.25Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2[more]
STX5_MOUSE2.763e-1653.25Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3[more]
STX5_HUMAN2.763e-1653.25Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
STX5_BOVIN2.763e-1653.25Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1[more]
SED5_YEAST4.713e-1654.29Integral membrane protein SED5 OS=Saccharomyces ce... [more]
STX3_CAEEL1.980e-1450.00Putative syntaxin-3 OS=Caenorhabditis elegans GN=s... [more]
SED5_SCHPO1.419e-1249.30Integral membrane protein sed5 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-D05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684377 ID=EY684377; Name=EY684377; organism=Citrus sinensis; type=EST; length=586bp
CAACAGCACCATCAGCAACAACAGCACCATCAGCAACAACAGCAACAGCA
GATGGTTCCATTGCAAGACAGTTACATGCAGAGCAGAGCTGAAGCTCTTC
AGAATGTAGAGTCTACCATCCATGAGCTGGGCAACATCTTCAACCAGCTT
GCGACCCTGGTCTCTCAGCAAGGGGAGATTGCTATCAGGATTGATGAGAA
CATGGATGACACCATGGCAAATGTAGAGGGGGCACAGGGAGCTTTGCTCA
AGTACCTCAACAGTATATCGTCAAATAGGTGGCTAATGATCAAGATATTC
TTTGTATTGATTTTTTTTCTTATGATTTTCCTATTCTTTGTGGCCTAGTC
AATACATAGAAACACCTAATTTAAAAGAAAGAACTTGGCTGCTCGTTTTC
ACTAGTATGGAGCCATTCCCATTCTTTACATATACTTTTCCTTTTTCCGG
TTAATTCAACAATTTGCTCCCAGAGAGGTATGATTATTACTCGATTTGCT
TTTGTAATATGTGTGGATAAACGTAACTGTACATGATGTTTAAAAAAAAT
GAGAATTGCAAGAACTTTGTAAAAAAAAAAAAAAAA
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