EY684355

Overview
NameEY684355
Unique NameEY684355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684355 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.574e-26
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 3
Query:  216 RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGEISLNILIDPKRVDVVKDIMKEFEEV*KKMTKTNM 569
            R  GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI  ++ +  FFV+P +  EKKRE+VDEI  SS++QP      LNIL+D KRV+++K+I+KEFE+V   +T T +
Sbjct:   52 RGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANF-LNILVDMKRVELIKEIVKEFEKVYNTLTDTEL 168          
BLAST of EY684355 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.127e-24
Identity = 68/161 (42.24%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  108 MASLQQTATLSLQS--NLFPSGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGEISLNILIDPKRVDVVKDIMKEFEEV*KKMTKTNM 569
            +A+L  ++T S     +L  S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T    +NILID +R+++VK+I+ EFE+V  K+T T +
Sbjct:   18 VAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANF-INILIDSERINLVKEILNEFEDVFNKITGTEV 177          
BLAST of EY684355 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 69/173 (39.88%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  108 MASLQQTATLSLQSNLFP-SGRAASRNP---------------LSATIPSGPRRR---GAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGEISLNILIDPKRVDVVKDIMKEFEEV*KKMTKTNM 569
            MASLQ T T SL S   P +    +R P               L   +P    RR   GA G RMS+  A SYA AL DLA +NNTL++ +AD +KIE++FS+ ++ ++F +P ++   KR+++ E   +S  QP T    LN+LID KR+D++ DI+KEFE V   +T T +
Sbjct:    1 MASLQHT-TASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGALGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNF-LNVLIDSKRIDMIIDIIKEFEFVYNTLTDTEL 171          
BLAST of EY684355 vs. ExPASy Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  129 ATLSLQSNLFPSG-RAASRNPLSATIPS----GPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGEISLNILIDPKRVDVVKDIMKEFEEV*KKMTKTNM 569
            A  S  S   P+  R+AS    +  +PS     PRRRG      +   A SYA AL ++A  N TLE T +D+EK++KIF+++ + EFF NPT+  E+K  ++DEI KS  LQP      +N+++D  R  ++ +I+ EFE +   +T T +
Sbjct:   17 AAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAKSYELQPHVVNF-INVVVDNFRATILPEIVVEFENIFNSLTGTEV 167          
The following BLAST results are available for this feature:
BLAST of EY684355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATPD_TOBAC4.574e-2652.54ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_SPIOL1.127e-2442.24ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_PEA8.074e-2339.88ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_SORBI7.821e-1837.50ATP synthase delta chain, chloroplastic OS=Sorghum... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-A12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684355 ID=EY684355; Name=EY684355; organism=Citrus sinensis; type=EST; length=872bp
TTGATTGACTCTCTCTCTCTCTCTCTCTTTTTCTGTGTGCAGCAGAAGCA
GCAGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGCATCAGCGTTCTCATC
GCGAAAAATGGCGTCTCTTCAGCAAACCGCAACCCTCTCACTCCAATCAA
ACCTCTTCCCCTCCGGCCGCGCGGCCTCTAGAAACCCATTATCCGCCACC
ATCCCCTCCGGCCCACGCCGGCGCGGCGCCCACGGAATCAGAATGTCAGC
CACAGTGGCGACCAGCTACGCCATCGCGCTGGTTGACTTGGCGAAAGCGA
ACAACACCCTCGAGTCCACGAGCGCCGACGTGGAAAAGATCGAGAAAATC
TTCAGCGAGAAACAAATCCATGAGTTCTTCGTGAACCCCACCATCGATAT
CGAGAAGAAAAGAGAGATGGTGGACGAGATATGCAAGTCGTCGGCGCTGC
AGCCGCTGACGGGGGAAATTTCCTTGAACATACTGATCGACCCGAAGAGG
GTGGACGTGGTGAAGGACATAATGAAGGAGTTCGAGGAGGTGTAAAAAAA
GATGACCAAAACGAATATGGGCGGGGGTGAACCCGGTGGGGGAAGCTGGG
ATCGGAACATTTGGGTCCAAAAAAGGAAAACCAAGTCCAAAAAGTTGACT
GGGGGCCAAAAAGGGGAGGAAAAAAAAACCGGGGATTGGACCCGAGCTTG
GGGGGGGGGGTTTTAAAAAACCGGAAATGGGAAAAGGGGGGGTCCAAAAT
TTGAATGAAAATAAAAGGGTGCAAAAAAAAAATTGGGAGGGAAAAACCCC
TGCCCCCAACTTTGATTTGGGGGGGAAGTGCCACAACTTTGGGGGGAAAG
AAAAAGAAAATTTTTTGGGAGG
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