EY684350

Overview
NameEY684350
Unique NameEY684350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.849e-35
Identity = 75/114 (65.79%), Postives = 78/114 (68.42%), Query Frame = 2
Query:    8 NFPGSTHASGPSCATPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            N  G  +       TPN          SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  288 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 9.175e-35
Identity = 74/114 (64.91%), Postives = 77/114 (67.54%), Query Frame = 2
Query:    8 NFPGSTHASGPSCATPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            N  G  +       TPN          SKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  283 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 75/111 (67.57%), Postives = 77/111 (69.37%), Query Frame = 2
Query:   17 GSTHASGPSCATPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            GS+ A      TPN          SKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  282 GSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.044e-34
Identity = 73/114 (64.04%), Postives = 77/114 (67.54%), Query Frame = 2
Query:    8 NFPGSTHASGPSCATPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            N  G  +       TPN          SKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  120 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 71/100 (71.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:   50 TPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            TPN          SKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  306 TPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.054e-30
Identity = 67/114 (58.77%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    8 NFPGSTHASGPSCATPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 349
            N  G  +       TPN          SKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  290 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.189e-28
Identity = 62/100 (62.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:   50 TPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 346
            TPN          +KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  292 TPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.049e-26
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   50 TPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 346
            TPN          +KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  323 TPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.495e-26
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 2
Query:   50 TPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 346
            TP            KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  274 TPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of EY684350 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.591e-25
Identity = 57/100 (57.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   50 TPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 346
            TPN           KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  319 TPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of EY684350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
G3PA_SPIOL1.849e-3565.79Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH9.175e-3564.91Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.565e-3467.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL2.044e-3464.04Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA3.855e-3371.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE3.054e-3058.77Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC2.189e-2862.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA2.049e-2660.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE3.495e-2656.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_ARATH6.591e-2557.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-A07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684350 ID=EY684350; Name=EY684350; organism=Citrus sinensis; type=EST; length=559bp
CCGGGGAAATTTCCCCGGGTCGACCCACGCGTCCGGCCCTTCGTGTGCCA
CACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACC
TTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACT
GAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCA
GGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTCATG
GGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGGTTA
CTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGT
GAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATGTTC
TTGTTTTTCATTTTTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTT
GTAGAATGTATAACACTATCTTATTATGGAACCCTTTTTCCTTTTGCCCT
GTCATTAATCATTATGCCATAAAATTCTTAACTTTAAAGTTGAAAAAAAA
AAAAAAAAG
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