EY684341

Overview
NameEY684341
Unique NameEY684341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.730e-90
Identity = 171/240 (71.25%), Postives = 188/240 (78.33%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQNF*GS*RCCKKCNMGI-------LRHEYLFGSVGEDQ*PA**GIYEHTHG------TNSSQSVALTQRKGNWPTFSPPLMKGILATG 693
            GTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTEGYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQ F        K + G+       LRHEYLFGSVG+DQ       Y H         T   QSV   Q + N   F+ P  + ++ATG
Sbjct:   69 GTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIF--------KVHEGVVEDVAWHLRHEYLFGSVGDDQ-------YLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFN-PFNEWVVATG 292          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.843e-86
Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQNF*GS*RCCKKCNMGI-------LRHEYLFGSVGEDQ 561
            GTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQQINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+EGYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A Q F        K + G+       LRHEYLFGSVG+DQ
Sbjct:   69 GTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIF--------KAHEGVVEDVAWHLRHEYLFGSVGDDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP-KNKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A P K K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.233e-56
Identity = 122/230 (53.04%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ*PA**GIYEHTHGTNS--SQSVALTQRKGNWPTFSPPLMKGILATG 693
            GTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHLLS SDD  +CLWDI+A PK  K ++A   F G     +     +L HE LFGSV +DQ      I++    T S  S SV     + N  +F+ P  + ILATG
Sbjct:   68 GTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLL-HESLFGSVADDQKLM---IWDTRSNTTSKPSHSVDAHTAEVNCLSFN-PYSEFILATG 291          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP7_XENLA (Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.233e-56
Identity = 122/230 (53.04%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ*PA**GIYEHTHGTNS--SQSVALTQRKGNWPTFSPPLMKGILATG 693
            GTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHLLS SDD  +CLWDI+A PK  K ++A   F G     +     +L HE LFGSV +DQ      I++    T S  S SV     + N  +F+ P  + ILATG
Sbjct:   68 GTHTSD-EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAVFTGHSAVVEDVAWHLL-HESLFGSVADDQKLM---IWDTRSNTTSKPSHSVDAHTAEVNCLSFN-PYSEFILATG 291          
BLAST of EY684341 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 4.582e-55
Identity = 108/184 (58.70%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   13 GTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQNF*GS*RCCKKCNMGILRHEYLFGSVGEDQ 561
            GTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    G+LLS SDD  ICLWDI+A PK  K ++A   F G     +  +  +L HE LFGSV +DQ
Sbjct:   69 GTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL-HESLFGSVADDQ 250          
The following BLAST results are available for this feature:
BLAST of EY684341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MSI1_SOLLC5.730e-9071.25WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH3.843e-8680.53WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
RBBP4_PONAB7.069e-5659.24Histone-binding protein RBBP4 OS=Pongo abelii GN=R... [more]
RBBP4_MOUSE7.069e-5659.24Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN7.069e-5659.24Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK7.069e-5659.24Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
RBBP4_BOVIN7.069e-5659.24Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]
RBBP7_XENTR9.233e-5653.04Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]
RBBP7_XENLA9.233e-5653.04Histone-binding protein RBBP7 OS=Xenopus laevis GN... [more]
RBBP4_XENTR4.582e-5558.70Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684341 ID=EY684341; Name=EY684341; organism=Citrus sinensis; type=EST; length=860bp
AAATGATCCTTNGGGACACACACATCTGAGAATGAGCCCAACTATCTCAT
GCTTGCTCAGGTCCAGCTTCCTCTTGATGACTCAGAGAATGATGCCCGCC
ATTACGATGATGACCGCTCTGATTTTGGTGGCTTTGGCTGTGCCAATGGC
AAGGTGCAAATAATTCAGCAAATAAACCATGATGGAGAGGTTAACCGGGC
CCGTTATATGCCTCAGAATCCATTTCTTATTGCCACGAAGACTGTTAGTG
CTGAGGTCTATGTTTTTGATTATAGCAAACACCCTTCTAAACCTCCTCTG
GATGGTGCATGTAGTCCTGATCTGAGGCTGAGGGGCCATAGCACTGAAGG
ATACGGCTTATCGTGGAGCAAGTTCAAGGAAGGTCATCTGTTAAGTGGTT
CTGATGATGCTCAAATATGTTTATGGGACATCAATGCTGCTCCTAAGAAT
AAGTCTCTTGAGGCCATGCAGAATTTTTAAGGTTCATGAAGGTGTTGTAA
AAAATGTAACATGGGCATCCTGAGGCATGAATACTTGTTTGGTTCTGTTG
GGGAAGATCAATAACCTGCTTAATAAGGGATCTACGAACACACTCATGGA
ACAAACAGTTCCCAATCTGTAGCGCTCACCCAAAGGAAGGGTAACTGGCC
TACCTTTTCACCCCCTTTAATGAAAGGAATTTTGGCAACAGGGATAATAA
AGGAAAAAAAAATAAAAGTTATTTAAAAACTAAAACAAATACAACACAGC
TTCTGCAAAACTTATTGAACAAGAAAAAAGAAAAAATATTAATCAAATTT
GGAGGGACACCCTAATAAAAAAGAAAGTATTTGCACTTTCTCTTGTTTTG
TGTAGAATGT
back to top