EY684321

Overview
NameEY684321
Unique NameEY684321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684321 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 71/184 (38.59%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   16 KLSSPDSVTFPGKPTQFSAECWFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDANKGLTNFEESPES----------------------------VTASWMKKRFFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSF 483
            K SSP     P       A+ WF+D  +L +D+FV+ ++ IK KG+R DLIG+ I HYASKWLP L  +DA  G T+ E   ++                             +A   ++R  VE+++ I PP++DS+ C F LRLLR A M+   PA   ELEKR+  QL+QA+L +L+IPS+
Sbjct:  255 KESSPSRQAVP------PADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLT-KDAPLGATHDEPWAQASAAGVGGGGLHMMIISGAGGGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSY 431          
BLAST of EY684321 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 67/188 (35.64%), Postives = 96/188 (51.06%), Query Frame = 1
Query:   79 WFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDA-----------------------------------------------NKGLTNFEESPESVTA----SWMKKRFFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFNH 489
            WF+D  IL +D+FV+ I+ IK KG+R +L+G++I HYA KWLP L  E                                                 + G TN  +   +  A    S   +R  VE+L+ I+PP+KDS+ C+F LRLLR ANM+ V PA   ELEKR+  Q +QA+L++L+IP +N+
Sbjct:  251 WFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNSSGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNN 438          
BLAST of EY684321 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 48/145 (33.10%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   55 PTQFSAECWFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDANKGLTNFEESPESVTASWMKKRFFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFNH 489
            P +     W ++ CILD+D+F   +S +K +GV+P  + S I  Y  K L DL  + + +G+  + +  ++ +    ++R  V+++V +LP +K   P NF   LLR A  ++     + ELEKRIS  L+  S+ +L+IPSF +
Sbjct:  181 PCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHSGRGV-KYSDPGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTY 324          
BLAST of EY684321 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.048e-16
Identity = 47/159 (29.56%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   31 DSVTFPGKPTQFSAECWFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDANKGLTNFEESP--ESVTASWMKKRFFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFNHTCGT 501
            + ++   +P   S++ W++DA +L    F + I+ ++++G+R D+I   + +Y  K LP L         +    +P       S  +++  +E +  +L  +K  +P  FF+ +LR A ++   P     LEKRI  QLDQA+L++L++PSF+HT  T
Sbjct:  200 NGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMET 358          
BLAST of EY684321 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   79 WFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDANKGLTNFEESPESVTASWMKKRFFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFNHTCGT 501
            W +D  +L +D + + ++ +K +GVRP+ IG+ +  YA +             LT   E  +++          VET+V +LP E   +P +F   LLR A +++   + R +LE+R+  QLD A+L +L+IPSF H   T
Sbjct:  221 WIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAER------------ELTKRSEHEQTI----------VETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDT 339          
The following BLAST results are available for this feature:
BLAST of EY684321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NPH3_ORYSJ1.280e-2638.59Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
RPT3_ARATH4.117e-2535.64Root phototropism protein 3 OS=Arabidopsis thalian... [more]
RPT2_ARATH1.675e-1833.10Root phototropism protein 2 OS=Arabidopsis thalian... [more]
Y1044_ARATH2.048e-1629.56BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH1.623e-1331.91BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684321 ID=EY684321; Name=EY684321; organism=Citrus sinensis; type=EST; length=905bp
CTAGAAATAATGAAGAAACTATCCTCGCCGGATTCTGTCACTTTCCCGGG
AAAACCAACCCAATTCTCAGCAGAATGTTGGTTCGATGACGCCTGCATTC
TCGACATGGACTACTTTGTCAAGACCATATCCGGCATCAAGGCCAAAGGC
GTCCGGCCAGACCTAATTGGCTCAATCATAGCTCACTATGCATCAAAATG
GTTACCGGACTTAGCCTATGAAGACGCCAACAAGGGCTTAACAAACTTCG
AAGAATCCCCGGAGAGTGTCACGGCTTCCTGGATGAAAAAACGTTTCTTT
GTAGAAACCCTAGTGGGAATCTTGCCGCCGGAGAAAGATTCACTCCCATG
CAACTTCTTCTTGCGTCTGCTTCGCACCGCCAACATGGTCAACGTAGAGC
CAGCATACAGAGAGGAGCTTGAGAAGAGGATTTCATGGCAATTGGACCAA
GCTTCGCTGAAAGAGTTGATGATACCTTCGTTTAATCACACTTGTGGCAC
GTTGCTTGATGTTAAGCTTGTGTCTAAGCTTGTGAAAAAGTTTGTTCCCT
TGTATATTGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTTAAGGTTGCAAA
GCTTGTTAAATTGCTACTTTAGCTGAAACTGCCAGGGATTCTAATTTTAA
GCCTTGGTCCGAATTTGGTTGCTCCTGGCTGGGGGCTCCCCCCCCAACCC
ATGGCTCCCCCCCTTGATGGAGGGAATTGGACCCCGGCCCCTTTGGACAC
TTTATTCTCAATGCCCCTCCCTCAAGTGAAACCATAAACAAGAAAAAAAA
AAAATCCTTTTGGTAAAAATAATCCCATTAAACCAAAAAGACCTTACCCA
TAAAAAAAACCCCCTTGGCGTTGCCGTCGCCCGAAAAGACACTTTTTTAA
CACCT
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