EY684308

Overview
NameEY684308
Unique NameEY684308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684308 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-38
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  195 RFSSSATRLIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVEDPE 506
            R SS A R +PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDAT+VEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE
Sbjct:   46 RLSSPAVR-VPRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPE 148

HSP 2 Score: 26.5646 bits (57), Expect = 4.799e-38
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 1 
Query:  514 EAIRLTVINNLLSSNPPGIKFPNLAKGCCLLAFDPS-KTSRLKVNIAT 654
            EA+RLT+INN++  +P       LA G     F P   T  + V+IAT
Sbjct:  151 EAVRLTIINNMIQYHPEASS--QLALGA---TFGPEPPTELVDVDIAT 193
[Close]
BLAST of EY684308 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-38
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  195 RFSSSATRLIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVEDPE 506
            R SS A R +PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDAT+VEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE
Sbjct:   46 RLSSPAVR-VPRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPE 148

HSP 2 Score: 26.5646 bits (57), Expect = 4.799e-38
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 1 
Query:  514 EAIRLTVINNLLSSNPPGIKFPNLAKGCCLLAFDPS-KTSRLKVNIAT 654
            EA+RLT+INN++  +P       LA G     F P   T  + V+IAT
Sbjct:  151 EAVRLTIINNMIQYHPEASS--QLALGA---TFGPEPPTELVDVDIAT 193
The following BLAST results are available for this feature:
BLAST of EY684308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ4.799e-3875.00Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI4.799e-3875.00Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-E07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684308 ID=EY684308; Name=EY684308; organism=Citrus sinensis; type=EST; length=901bp
CTATCTTTGTCTGTCTCTTTTCTTATTAGAGTTTTTTTTTTTCAAAAAAA
AAAAAAATGGCTGTGGCTATGGGTTCTGCTTCTGTGCATTTAGCTGTTCA
GATCTGTTGTAATAATGAATTTAAAGCTAATGCTGCATTTGTTACAGGCT
CTCCCCGTTTTGGTAACAAACCACTTTGCTGTCCTGCCAGGAGAAGATTC
TCATCTTCAGCAACTAGATTAATTCCTCGAGCCTCCTCAGCTACAGCTGT
GGAGGATGGAAGTAATGGTGACACTGATACAATTCCGACTCCCAAAGTCA
TAATAGACCTAGATTCTGACCCGGATGCAACCGTAGTGGAGATAACCTTT
GGCGATCGCCTTGGAGCTCTTCTTGATACTATGAACGCACTTAAGAACCT
TGGGCTGAATGTTGTCAAGGCAAATGTTTTTTTGGATTCTTCTGGGAAGC
ACAACAAGTTTGCCATTACCAAAGCTGATACTGGTAGGAAAGTTGAAGAT
CCTGAAGGTGCTTGAGGCAATTCGTTTGACAGTTATAAACAATCTACTTT
CAAGTAATCCCCCCGGAATCAAATTCCCCAATTTGGCCAAGGGGTGTTGC
CTTTTGGCGTTTGATCCCTCCAAAACAAGCAGGTTGAAGGTGAACATAGC
AACCCCACATAAATGTTTTTTGATGATGGGGCCCCAACCCAAATTTTGCT
TTTTGGGTGGAAACGGCTGAATTCACCCGGAATTTTTTGGGGGATTTTTG
TAAAAATTAACCACTGAAATACCATTTTCTTTGGTTTAAATCCCGGAAAA
AATTTTGAATAATGGAGGGGGTTTTTTGGGGAAAAAGGAAAATTTTTCCT
TTCCTCCCCCCAAAAGGGAAAAAACCCCTTTTTTTATTCGCCCCCCTCCC
C
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