EY684292

Overview
NameEY684292
Unique NameEY684292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.590e-66
Identity = 116/134 (86.57%), Postives = 125/134 (93.28%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRNA 437
            DGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D DY VFHSPYNKLVQKSFARL +NDFLRNA
Sbjct:  137 DGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDADYIVFHSPYNKLVQKSFARLLYNDFLRNA 270          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.930e-45
Identity = 85/133 (63.91%), Postives = 102/133 (76.69%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 434
            DGR  +VV  D AVY +GPARPTGGA  VAMLIGP+API FES LRG HM + YDFYKP++ SEYP VDGKLS +CY  A+D+CY  + + FEK  G+ FS+  VD+ +FHSPYNKLVQKSF R+ +NDFL N
Sbjct:  139 DGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGLRGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQVDFALFHSPYNKLVQKSFGRMLYNDFLNN 271          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.081e-43
Identity = 85/136 (62.50%), Postives = 100/136 (73.53%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFL 428
            DGRY LVVC D AVY  G ARPTGGA AVAML+GP+AP+  E  LRG+HM + YDFYKP++ SEYP+VDGKLS  CYL ALD CY ++ QK EK        R F++ DV Y +FH+P+ KLVQKS ARL FNDFL
Sbjct:  186 DGRYALVVCGDIAVYPSGNARPTGGAGAVAMLVGPEAPLVLERGLRGTHMENVYDFYKPDVTSEYPLVDGKLSIQCYLRALDKCYAFYRQKIEKQWKQAGIDRPFTLDDVQYMIFHTPFCKLVQKSLARLMFNDFL 321          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 8.963e-43
Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRNA 437
            DGRY LVVC D AVY  G ARPTGGA AVAMLIGP AP+  E  LRG+HM +AYDFYKPNLASEYP+VDGKLS  CYL ALD CY  + +K +         + F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++
Sbjct:  186 DGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSS 324          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.529e-42
Identity = 84/136 (61.76%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFL 428
            DGRY +VVC D AVY  G ARPTGGA AVAMLIGP AP+A E  LRG+HM + YDFYKPNLASEYP+VDGKLS  CYL ALD CY  + +K +         R F++ D+ Y +FH+P+ K+VQKS ARL FNDFL
Sbjct:  186 DGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFL 321          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.529e-42
Identity = 84/138 (60.87%), Postives = 101/138 (73.19%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--RQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 434
            DGRY LVV  D AVYA G ARPTGG  AVA+LIGP+AP+ FE  LRG+HM HAYDFYKP++ SEYP+VDGKLS  CYL ALD CY  +C+K     + EG  + F++ D  + +FHSPY KLVQKS AR+  NDFL +
Sbjct:  149 DGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLND 286          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.529e-42
Identity = 84/138 (60.87%), Postives = 101/138 (73.19%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--RQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 434
            DGRY LVV  D AVYA G ARPTGG  AVA+LIGP+AP+ FE  LRG+HM HAYDFYKP++ SEYP+VDGKLS  CYL ALD CY  +C+K     + EG  + F++ D  + +FHSPY KLVQKS AR+  NDFL +
Sbjct:  149 DGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLND 286          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.529e-42
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLR 431
            DGRY LVV  D AVYA+G ARPTGGA AVAML+G +AP+ F+  +R SHM HAYDFYKP+L+S YP VDGKLS  CYL ALD CY+ +C K +K  G +F +  +D  +FH+PY KLVQKS ARL  NDF+R
Sbjct:  136 DGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGVRSSHMQHAYDFYKPDLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERLDAVLFHAPYCKLVQKSLARLVLNDFVR 267          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.997e-42
Identity = 83/134 (61.94%), Postives = 101/134 (75.37%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-EGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 434
            DGRY LVV  D AVY++G ARPTGGA  V MLIGP+A + F+  LRG+HM +  DFYKP+L+SEYP VDGKLS  CYL ALD CY  + +KFE + +  +FSM   DY  FHSPYN+LVQKS+ARL +NDFL+N
Sbjct:  139 DGRYALVVTGDIAVYSKGAARPTGGAGVVTMLIGPNATLIFDQSLRGTHMENVNDFYKPDLSSEYPYVDGKLSIECYLRALDKCYLEYKKKFESINDDNKFSMDSFDYVCFHSPYNRLVQKSYARLIYNDFLQN 272          
BLAST of EY684292 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.406e-42
Identity = 84/139 (60.43%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   36 DGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EGRQFSMMDVDYFVFHSPYNKLVQKSFARLFFNDFLRNA 437
            DGRY LVVC D AVY  G  RPTGGA AVAMLIGP AP+  E  LRG+HM +AYDFYKPNLASEYP+VDGKLS  CYL ALD CY  + +K +         + F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++
Sbjct:  186 DGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSS 324          
The following BLAST results are available for this feature:
BLAST of EY684292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS_ARATH2.590e-6686.57Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCSA_DICDI1.930e-4563.91Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCS2_BOVIN3.081e-4362.50Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE8.963e-4361.15Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_HUMAN1.529e-4261.76Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS1_PONAB1.529e-4260.87Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN1.529e-4260.87Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_BLAGE1.529e-4262.12Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCSB_DICDI1.997e-4261.94Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS2_RAT3.406e-4260.43Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-C12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684292 ID=EY684292; Name=EY684292; organism=Citrus sinensis; type=EST; length=860bp
TAAGAGGAAACTTGGGTAGGAGAGTGCTTCATGGGGATGGACGCTATGGA
CTAGTTGTATGCACAGATAGTGCGGTTTATGCTGAAGGGCCAGCTCGGCC
CACCGGAGGAGCAGCTGCCGTCGCCATGTTGATAGGGCCTGATGCTCCTA
TTGCTTTTGAAAGCAAACTTAGAGGCAGTCATATGTCTCATGCCTATGAT
TTTTACAAGCCCAATCTGGCTAGTGAATATCCAGTTGTTGATGGAAAGTT
GTCACAAACTTGTTATCTCATGGCACTTGATTCTTGCTACAAGTATTTCT
GTCAGAAGTTTGAGAAATTGGAGGGTAGGCAATTTTCAATGATGGATGTT
GATTATTTTGTCTTTCACTCTCCATACAACAAGCTTGTGCAGAAAAGTTT
TGCTCGGCTGTTCTTTAATGATTTCTTAAGGAATGCCAGGTTTTGTGTCT
CACTCTGGTTTGGTTGTATTTATCCCATCTCATGTACAACATATTGGAAT
GGCTTTTTGAATTAATGGATTAGTCCTTTTTTTTAACAACAATTTAATTT
TCTATTAACCACTGCAATTGGCATTATAAACCCACGAATTTTTAGCATGG
GGGAAATTTTAAATTAGACTTGGAGGAAAACCAAAGGGTGGTTGTTTCCT
AAAAAAAATAAAAAGAAAATAAACGGCGGGGGTAAAATTTCCCCCATGCC
CGGTTTAAAAAAAGAAAATTTAAAATAAATTTTCTTTACTAAATCCTTCC
TCTTGGGGGAACATAAAAACACAAAATTCAATAATAGAAGACCCTATAGA
ATGATATTTATTATTTTTGGGGAACAAATTTTCTAAGAATACCTTCTACA
CTTAGAAATT
back to top