EY684289

Overview
NameEY684289
Unique NameEY684289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.109e-78
Identity = 145/163 (88.96%), Postives = 148/163 (90.80%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV*LC*PLP 539
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVCKGIF  D VADDD+V L    P
Sbjct:  176 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFP 338          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 9.887e-78
Identity = 138/163 (84.66%), Postives = 145/163 (88.96%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV*LC*PLP 539
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI+VTG DFSTL APLI DGRM+KFYWAPTREDRIG+C GIF  D V  +D+V L    P
Sbjct:  173 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFP 335          

HSP 2 Score: 32.3426 bits (72), Expect = 9.887e-78
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 1
Query:  526 VDPFPGLSH*FP*SP*RAIIDDDVVKKLDPWVLGVG--KNWKNLVKSKETNSTF 681
            VD FPG S  F     RA + DD V+K   W +GVG  +  +NLV SKE+  TF
Sbjct:  331 VDTFPGQSIDFF-GALRARVYDDEVRK---WAVGVGVERIGRNLVNSKESPPTF 380          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.660e-77
Identity = 140/156 (89.74%), Postives = 145/156 (92.95%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV 518
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVCKGIF  D V ++D+V
Sbjct:  176 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIV 331          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 1.038e-76
Identity = 138/156 (88.46%), Postives = 145/156 (92.95%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV 518
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI+VTG DFSTL APLI DGRMEKFYWAPTR+DR+GVCKGIF  D V D+D+V
Sbjct:  167 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIV 322          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 1.148e-75
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV*LC*PLP 539
            ELV  KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPI+ TG DFSTL APLI DGRMEKFYWAPTREDRIGVCKGIF  DK+ D+D+V L    P
Sbjct:  176 ELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFP 338          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.696e-75
Identity = 137/156 (87.82%), Postives = 143/156 (91.67%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV 518
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTG DFSTL APLI DGRMEKFYWAPTR+DRIGVCKGIF  D V+D+ VV
Sbjct:  166 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVV 321          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.692e-74
Identity = 137/156 (87.82%), Postives = 142/156 (91.03%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV 518
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVCKGIF  D V ++ VV
Sbjct:  175 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVV 330          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.822e-74
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV*LC*PLP 539
            ELVF KM I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTT YTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVC GIF +D VA +D+V L    P
Sbjct:  176 ELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFP 338          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.298e-74
Identity = 137/156 (87.82%), Postives = 141/156 (90.38%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV 518
            ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVC GIF  D V  +DVV
Sbjct:  180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVV 335          
BLAST of EY684289 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.225e-74
Identity = 141/163 (86.50%), Postives = 143/163 (87.73%), Query Frame = 3
Query:   51 ELVFTKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTHYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPILVTGKDFSTL*APLIPDGRMEKFYWAPTREDRIGVCKGIFMNDKVADDDVV*LC*PLP 539
            ELVF KMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTT YTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTG DFSTL APLI DGRMEKFYWAPTREDRIGVCKGIF  D V D+ VV L    P
Sbjct:  164 ELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFP 325          
The following BLAST results are available for this feature:
BLAST of EY684289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_LARTR1.109e-7888.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA9.887e-7884.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR4.660e-7789.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.038e-7688.46Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.148e-7585.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.696e-7587.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.692e-7487.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO4.822e-7485.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC6.298e-7487.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU8.225e-7486.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-C09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684289 ID=EY684289; Name=EY684289; organism=Citrus sinensis; type=EST; length=909bp
ATTTCCCGAGGGGTTCCGGACCCACGCCATCCGGAGACCCTTTGGGTCGC
GAGCTTGTTTTCACCAAGATGGGCATCAACCCTATTATGATGAGTGCCGG
AGAATTGGAAAGTGGCAATGCTGGAGAACCCGCTAAATTGATCAGGCAGA
GGTACCGTGAGGCAGCTGACATTATCAGGAAGGGAAAAATGTGCTGCCTC
ATGATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCA
TTACACAGTTAACAACCAAATGGTTAACGCCACACTCATGAACATTGCTG
ATAACCCAACTTGTGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAAC
CCCCGTGTCCCAATCTTAGTCACCGGTAAAGACTTCTCAACATTGTAAGC
TCCTCTCATCCCTGATGGTCGTATGGAGAAATTCTACTGGGCTCCTACAA
GGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCATGAATGACAAAGTG
GCTGATGACGACGTTGTCTAGCTTTGTTGACCCCTTCCCCGGCCTATCAC
ATTGATTTCCTTGAAGCCCCTGAAGGGCCATAATCGATGATGACGTAGTT
AAGAAATTGGATCCCTGGGTATTGGGTGTTGGAAAGAATTGGAAGAACCT
TGTTAAATCAAAAGAAACAAACTCAACTTTTCATAAACAAACGGTGAATA
ATGGGAAAAGCTAGTCCAAGATGCGGAAACAATGAATTGTGCCAAAACTG
TAAAAAGGTAAAAAGGTTTTCATTTGGGCTAAAAATTAATTTTAAGTGAA
GCATCCCTTTTGGATAAAACCACAACGTACATCGCATACCGCAAAGCGAA
AATTTTTTTAGGAAACAACTACCCCACACACATTGGAAATTTTCGAATTA
ATAGGAAAA
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