EY684278

Overview
NameEY684278
Unique NameEY684278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.614e-95
Identity = 156/171 (91.23%), Postives = 166/171 (97.08%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 528
            G D  V+KMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTEGYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQIFKVHEG
Sbjct:   58 GKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEG 228          

HSP 2 Score: 36.1946 bits (82), Expect = 3.614e-95
Identity = 36/101 (35.64%), Postives = 48/101 (47.52%), Query Frame = 3
Query:  555 LRPEYLFGSVGG*IQYPGLKWNLRKPPWNQPL-PICCPSPEWGLTA*PFNPFNGRIFGNGGLLEKTF*NYLI*PKKQPWLLHNI*TFQKKKFSSNWGGNPK 854
            LR EYLFGSVG   QY  + W+LR P   +P+  +     E    A  FNPFN  +   G   +KT    L   +K    LH +   +++ F   W  NPK
Sbjct:  237 LRHEYLFGSVGD-DQYLHV-WDLRTPSVTKPIQSVVAHQSEVNCLA--FNPFNEWVVATGS-TDKTV--KLFDLRKISTALHTLDCHKEEVFQVGW--NPK 328          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 2.134e-92
Identity = 150/171 (87.72%), Postives = 163/171 (95.32%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 528
            G D  V+KMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQQINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+EGYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A QIFK HEG
Sbjct:   58 GKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEG 228          

HSP 2 Score: 38.891 bits (89), Expect = 2.134e-92
Identity = 38/101 (37.62%), Postives = 50/101 (49.50%), Query Frame = 3
Query:  555 LRPEYLFGSVGG*IQYPGLKWNLRKPPWNQPL-PICCPSPEWGLTA*PFNPFNGRIFGNGGLLEKTF*NYLI*PKKQPWLLHNI*TFQKKKFSSNWGGNPK 854
            LR EYLFGSVG   QY  L W+LR P  ++P+  +   S E    A  FNPFN  +   G   +KT    L   +K    LH   + +++ F   W  NPK
Sbjct:  237 LRHEYLFGSVGD-DQYL-LIWDLRSPSASKPVQSVVAHSMEVNCLA--FNPFNEWVVATGS-TDKTV--KLFDLRKLSTALHTFDSHKEEVFQVGW--NPK 328          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.732e-55
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 1.732e-55
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP-KNKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A P K K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.732e-55
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.732e-55
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.732e-55
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 1.123e-54
Identity = 102/170 (60.00%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    G+LLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.467e-54
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  + +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S +V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    G+LLS SDD  ICLWDI+A PK  K ++A  IF  H
Sbjct:   58 GKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226          
BLAST of EY684278 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.467e-54
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 1
Query:   16 GVDPRVRKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVH 522
            G D  +  ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHLLS SDD  +CLWDI+A PK  K ++A  IF  H
Sbjct:   57 GKDYALHWLVLGTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAIFTGH 225          
The following BLAST results are available for this feature:
BLAST of EY684278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MSI1_SOLLC3.614e-9591.23WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH2.134e-9287.72WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
RBBP4_PONAB1.732e-5560.59Histone-binding protein RBBP4 OS=Pongo abelii GN=R... [more]
RBBP4_MOUSE1.732e-5560.59Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN1.732e-5560.59Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK1.732e-5560.59Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
RBBP4_BOVIN1.732e-5560.59Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]
RBBP4_XENTR1.123e-5460.00Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]
RBP4B_XENLA1.467e-5460.00Histone-binding protein RBBP4-B OS=Xenopus laevis ... [more]
RBBP7_XENTR1.467e-5460.00Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-B09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684278 ID=EY684278; Name=EY684278; organism=Citrus sinensis; type=EST; length=910bp
CCCGGGAATTTCCCCGGGGTCGACCCACGCGTCCGGAAAATGATCCTTGG
GACACACACATCTGAGAATGAGCCCAACTATCTCATGCTTGCTCAGGTCC
AGCTTCCTCTTGATGACTCAGAGAATGATGCCCGCCATTACGATGATGAC
CGCTCTGATTTTGGTGGCTTTGGCTGTGCCAATGGCAAGGTGCAAATAAT
TCAGCAAATAAACCATGATGGAGAGGTTAACCGGGCCCGTTATATGCCTC
AGAATCCATTTCTTATTGCCACGAAGACTGTTAGTGCTGAGGTCTATGTT
TTTGATTATAGCAAACACCCTTCTAAACCTCCTCTGGATGGTGCATGTAG
TCCTGATCTGAGGCTGAGGGGCCATAGCACTGAAGGATACGGCTTATCGT
GGAGCAAGTTCAAGGAAGGTCATCTGTTAAGTGGTTCTGATGATGCTCAA
ATATGTTTATGGGACATCAATGCTGCTCCTAAGAATAAGTCTCTTGAGGC
CATGCAGATTTTTAAGGTTCATGAAGGGTGTTGTAAAAAATGTAGCATGG
CATTCTGAGGCCTGAATACTTGTTTGGTTCCGTTGGGGGATGAATTCAAT
ACCCTGGCCTTAAATGGAATCTACGGAAACCACCATGGAACCAACCCCTT
CCAATCTGTTGTCCCTCACCAGAATGGGGGTTAACTGCCTAGCCTTTCAA
CCCCTTTAATGGAAGGATTTTTGGCAACGGGGGCCTACTGGAAAAAACAT
TTTAAAATTATTTGATCTAACCCAAAAAACAACCCTGGCTCCTGCACAAC
ATTTGAACGTTCCAAAAGAAGAAATTTTCTTCTAATTGGGGGGGAAACCC
CAAAAAAAGAAAAAAATTTTTAACTTCTCTGTTTTTCCTGGAAAAAAAGG
GATGATGGGT
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