EY684267

Overview
NameEY684267
Unique NameEY684267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684267 vs. ExPASy Swiss-Prot
Match: FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   13 RGRPTRPCLVERVTLNKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 201
            +G     CLV+RVT +KC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:  137 KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197
[Close]
BLAST of EY684267 vs. ExPASy Swiss-Prot
Match: FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   13 RGRPTRPCLVERVTLNKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 201
            +G     CLV+RVT +KC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:  137 KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197
[Close]
BLAST of EY684267 vs. ExPASy Swiss-Prot
Match: FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   13 RGRPTRPCLVERVTLNKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 201
            +G     CLV+RVT +KC+IVAT DRDLKRRIRK+PGVPIMYI+ H+Y+IER+P+    GAPR
Sbjct:  137 KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY--GAPR 197
[Close]
BLAST of EY684267 vs. ExPASy Swiss-Prot
Match: FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.661e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   13 RGRPTRPCLVERVTLNKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPEATVGGAPR 201
            +G     CLV+RVT +KC+IVAT DRDLKRRIRK+PGVPIMY++ H+Y+IER+P+    GAPR
Sbjct:  137 KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDY--GAPR 197
[Close]
BLAST of EY684267 vs. ExPASy Swiss-Prot
Match: FCF1_DICDI (rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.833e-12
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 RGRPTRPCLVERVTLNKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIERLPE 177
            +G     C++ R+T+++ FIVATCD DL+RRIRK+PGVPI+Y+   KY++ER+P+
Sbjct:  137 KGTYADDCIINRITMHRMFIVATCDADLRRRIRKIPGVPIVYLKGKKYTVERMPD 191
The following BLAST results are available for this feature:
BLAST of EY684267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FCF1_PONAB2.733e-1665.08rRNA-processing protein FCF1 homolog OS=Pongo abel... [more]
FCF1_HUMAN2.733e-1665.08rRNA-processing protein FCF1 homolog OS=Homo sapie... [more]
FCF1_BOVIN2.733e-1665.08rRNA-processing protein FCF1 homolog OS=Bos taurus... [more]
FCF1_MOUSE4.661e-1663.49rRNA-processing protein FCF1 homolog OS=Mus muscul... [more]
FCF1_DICDI1.833e-1252.73rRNA-processing protein FCF1 homolog OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-051-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684267 ID=EY684267; Name=EY684267; organism=Citrus sinensis; type=EST; length=915bp
CGCGGAAATCCCCGGGGTCGACCCACGCGTCCGTGTCTTGTTGAAAGAGT
TACCCTTAATAAATGCTTCATAGTTGCTACATGTGATCGAGATCTCAAAC
GAAGGATACGGAAGGTTCCCGGAGTGCCTATCATGTACATAACCCGGCAC
AAGTATTCAATTGAGCGGCTGCCAGAGGCAACAGTTGGTGGAGCTCCAAG
AATTTGATAATGGGAGGAGGATCATTCAATTGAGAATCATCTGTGCTGCT
GTCCTAACTCAACGTTGAGCCTTAAGATGTTCTAAATATTAGAACTTTTG
CGTAGGAATGATGATAGCTCGATGAAATGATGTGTGTATCAGTATTGTGA
TTGAGGCACTTATTTTGTGCCTTGTGTAATTCTATTAATGATATTTTTCC
TACTAAGACTAAAAAAATAAAAAAAAAAGAGAGAAAAAGAGGGGGAAGTA
AAAAAAAACTATCAGTAATTGATAGTAGGTAAGAAAATCATATAAAAAAA
AAAGGGGGGGGGCGCTCAAAAAAATCAAATTTAAAGAACCGGGGGAGGGA
AGGGCAAAAAACCTTCAAGAAGAACACCCAAAATATATACAGGGGCGCTC
TTTTATCAAAGGACGTAGGGGGAGAAAACCCCGGGCGATTCACCCTTTAA
ATCGTCGGGCAAATAATCCCCCTTATTTACGATGGGGTATAAAAAAAAAA
GGCCCCCCCCCATTTCCCCCTCCACCACATTTCCCACTCGCGGAAGGGAG
AAAGAGGGATCCCCCACTATATCGGCCCATTATTTTCCTGGGGGGAGTGG
AGGAGGTAAATAAATGCATTGACTAACAATATATTGAACGAAGTCCCCTA
AAAGACCCACACCTCTTTTCTCTTTTTTTCTCTCTCTCTTTTATTCCAAC
CAAGAGTGCGCGAGG
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