EY684253

Overview
NameEY684253
Unique NameEY684253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: BARA_SHIFL (Signal transduction histidine-protein kinase barA OS=Shigella flexneri GN=barA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  200 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 415
            + + V + DTG GIP   QSR+F  F Q   SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F
Sbjct:  443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: BARA_ECOLI (Signal transduction histidine-protein kinase barA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  200 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 415
            + + V + DTG GIP   QSR+F  F Q   SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F
Sbjct:  443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: BARA_ECOL6 (Signal transduction histidine-protein kinase barA OS=Escherichia coli O6 GN=barA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  200 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 415
            + + V + DTG GIP   QSR+F  F Q   SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F
Sbjct:  443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: BARA_ECO57 (Signal transduction histidine-protein kinase barA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  200 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 415
            + + V + DTG GIP   QSR+F  F Q   SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F
Sbjct:  443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: DHKE_DICDI (Hybrid signal transduction histidine kinase E OS=Dictyostelium discoideum GN=dhkE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    5 KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK---GFKTFNQDGSTSPFKSSSADL-INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 445
            KG + V V +V+++ ++       +++ N  +     +  ++     GF   N + + +    ++  L   L  SVED+G GI  E    +FTPF Q+G S  R + GTG+GLSISK L   M GEIG  S+  +GS F+FT++    S+T
Sbjct:  805 KGQVMVKVSIVDQINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKIVGFSNNNNNNNNNNNNGNNGILNFKLSFSVEDSGVGIKEEVLDCLFTPFHQLGGS-PRKYLGTGLGLSISKKLTTLMGGEIGVKSVYGVGSAFSFTSILSTTSTT 954          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: DHKJ_DICDI (Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  179 KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 427
            KS S   + L  SV DTG GIP +    IF  F Q   SI+R +GGTG+GL+IS  LV  MKG++  VS    GSTF FTA F
Sbjct: 1491 KSLSCGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF 1573          
BLAST of EY684253 vs. ExPASy Swiss-Prot
Match: DHKK_DICDI (Hybrid signal transduction histidine kinase K OS=Dictyostelium discoideum GN=dhkK PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  203 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVFGNGSSTS 448
            N+   V+DTG G+P+E+  +IF  F+Q  PS SR +GG+G+GL +   LV  MKGEIG  + P+  GSTF F      G+  S
Sbjct:  975 NISFRVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPLEEGTDQS 1057          
The following BLAST results are available for this feature:
BLAST of EY684253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BARA_SHIFL2.419e-1354.17Signal transduction histidine-protein kinase barA ... [more]
BARA_ECOLI2.419e-1354.17Signal transduction histidine-protein kinase barA ... [more]
BARA_ECOL62.419e-1354.17Signal transduction histidine-protein kinase barA ... [more]
BARA_ECO572.419e-1354.17Signal transduction histidine-protein kinase barA ... [more]
DHKE_DICDI3.493e-1233.11Hybrid signal transduction histidine kinase E OS=D... [more]
DHKJ_DICDI1.734e-1150.60Hybrid signal transduction histidine kinase J OS=D... [more]
DHKK_DICDI3.862e-1144.58Hybrid signal transduction histidine kinase K OS=D... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-H06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684253 ID=EY684253; Name=EY684253; organism=Citrus sinensis; type=EST; length=830bp
AGAAAAAGGACACATCTTTGTCACTGTTTACCTTGTTGAAGAGGTGGTTG
ACTCTATAGAAGTTGAGACAGAATTGTCATCATCAAAGAACACCTTGAGT
GGTTATCCTGTTGCAGACAGATGCCACAGCTGGAAAGGATTTAAAACTTT
CAATCAAGATGGATCAACTAGTCCGTTCAAATCATCATCCGCTGATCTCA
TCAATTTAATTGTGTCAGTTGAAGATACAGGTCAAGGAATCCCTCTAGAA
GCCCAATCCCGCATTTTCACCCCTTTTATGCAGGTTGGTCCATCTATTTC
CCGAACTCATGGAGGTACGGGTATTGGGCTAAGCATAAGCAAGTATTTGG
TTGGCCGCATGAAGGGTGAAATTGGCTTTGTTAGCATTCCAAACATTGGG
TCTACTTTTACATTTACTGCTGTCTTTGGCAATGGCTCCTCCACTTCAAA
CGAAGCACAATAGCCAGCAAATGAACCACCAGCCCAACTCTGTGTCTTCA
GAATTTCAAGGTATGAAGGGCTTAGTTGTGGACCCCAAACCCTCCGAGCC
CAAGGGGTCAAGATAATCAAACCCAACGTCCTGGAATTCAAGTCCAAATG
GTTTCCGACCTGCTTCCATGTTTTACCCCAAAAACCCGTGGTAATAAAAA
TTTCAACAGGAACCCTTGGCCAACAAAAAATTTTGGGAAAAAGGAAAACA
AAAGGTTTCACCCCCTTTTTGTTAAAAAACTTTGGAAAAAAACTTGGGTT
GGGGGGGTTTTCGCTCAAAACGTGGTTTTTCTTTGGGTTAAAATTTTATT
ACCCCCTCCTCTAAAAAAAAAAAAACCCCT
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