EY684227

Overview
NameEY684227
Unique NameEY684227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 8.080e-43
Identity = 103/202 (50.99%), Postives = 118/202 (58.42%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGDWDRDTVVRALQAAYNIPERAGEYLNSGI 675
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K      ST                           VP                                VYG AASNLVAG  LE  +QQILDMGGG WDRDTVVRAL+AA+N PERA EYL SGI
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVP-------------TSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGI 190          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.294e-36
Identity = 93/203 (45.81%), Postives = 109/203 (53.69%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV-YGHAASNLVAGNNLEGAIQQILDMGGGDWDRDTVVRALQAAYNIPERAGEYLNSGI 675
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML +     G+GS+                            P+                                 YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+N PERA EYL SG+
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGV 200          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.169e-33
Identity = 82/200 (41.00%), Postives = 106/200 (53.00%), Query Frame = 1
Query:   76 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGDWDRDTVVRALQAAYNIPERAGEYLNSGI 675
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G +                           VP                                 YG AAS LV+G+++E  +QQI++MGGG WD++TV RAL+AAYN PERA +YL SGI
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVP----------------ASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 188          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 5.622e-28
Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 321
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86          

HSP 2 Score: 87.8113 bits (216), Expect = 9.946e-17
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  505 VYGHAASNLVAGNNLEGAIQQILDMGGGDWDRDTVVRALQAAYNIPERAGEYLNSGI 675
            VYG AASNL AG+NLE  IQQILDMGGG WDR+TVV AL+AA+N PERA EYL +GI
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.996e-18
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   76 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 297
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          

HSP 2 Score: 80.4925 bits (197), Expect = 1.588e-14
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  508 YGHAASNLVAGNNLEGAIQQILDMGGGDWDRDTVVRALQAAYNIPERAGEYLNSGI 675
            YG AAS LV+G++LE  +QQI++MGGG WD++TV RAL+AAYN PERA +YL SGI
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 190          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.216e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 306
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.216e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 306
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.074e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 297
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 306
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY684227 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.941e-12
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   70 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 321
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G+G++
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86          
The following BLAST results are available for this feature:
BLAST of EY684227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH8.080e-4350.99Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ4.294e-3645.81Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH1.169e-3341.00Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23C_ARATH5.622e-2871.43Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_ARATH8.996e-1858.11Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_RAT1.216e-1448.10UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.216e-1448.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN2.074e-1448.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN2.709e-1446.84UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN1.941e-1241.67UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-E10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684227 ID=EY684227; Name=EY684227; organism=Citrus sinensis; type=EST; length=956bp
GAAAACAAATAAAATAGTTCGCATTCGAGAAGACCCAACGGAACGTAGAA
AAAGAAGAAGATGATGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTT
TCGACGTCGAAGTGAAACCTGAAGACACGGTCTTTGATGTGAAAATGAAG
ATAGAAACTGTTCAAGGATCGGATGTTTATCCTGCTGCACAACAGATGCT
GATTTATCAGGGGAAAGTCCTCAAAGATGATACTACACTGGAAGAGAACA
AAGTAGCTGAAAATAGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGA
CCAACTGGTGAAGGTTCAACTAGGTCAACTGCGCCTACAAAGGCTCCCCA
GTCAAGTGCCCCAACCCCTGCAGCAACCCCAGCAACAGCTCCTCAGACTG
CCGTGCCAATCTCTACAGAGCCTACACCTGCTCCTGCACCTGCTCCTACT
CCTGCTCCTGCTTCTGCTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTC
TGGTGTGTATGGGCATGCTGCATCTAATCTGGTTGCTGGGAACAACTTGG
AAGGAGCAATCCAGCAGATTCTTGATATGGGTGGAGGGGACTGGGATAGA
GATACTGTTGTTCGTGCTCTTCAAGCTGCTTATAATATCCCTGAAAGGGC
TGGTGAATATTTAAATTCTGGGATAACTGGAGCAAGCTGAAATTTCACCT
GGGGGCCGCGCCCCCGGGAAAGGGAAAAACTGGAAATCCTCCAACTCAAA
GGGCCCCACCCAACCCACCGGGGCCCCGTTTAATTTTTAGGGGGCCAAAA
GGGAAATCCTTTTGGGACCCTTTTTCTCCGGGGGGGCTCCCGAAAGGGGG
GTGTCGGGGGGGGGCGGGGGGGGTGGGGGAGTCTTTGGGATTTTTTTACG
ATAAAAAAGCCCAAAAATTTTTTAAAGTTTTTTGGGGAGAGAATAGGGGG
GGGGGG
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