EY684218

Overview
NameEY684218
Unique NameEY684218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 5.151e-69
Identity = 119/156 (76.28%), Postives = 135/156 (86.54%), Query Frame = 2
Query:   26 ISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            ISS+ +AT NR    QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM GCTD+ QV+KEVGE +KEYP++FIR+I
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVI 159          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.164e-67
Identity = 118/157 (75.16%), Postives = 135/157 (85.99%), Query Frame = 2
Query:   23 LISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            LISS  V T NRA  AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP+ G TD++QVLKE+ + + EYP SFIRII
Sbjct:    3 LISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRII 159          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.821e-67
Identity = 122/166 (73.49%), Postives = 140/166 (84.34%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRIIRIEQQ 508
            MAS +ISS TVAT +RA  AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM GCTDATQVL E+ E  K YP S IRII  + +
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNK 166          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 8.224e-67
Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 2
Query:   11 MASPLISSTTVAT--ANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS +ISS TVAT  A+R   AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM GCTD++QVLKE+ E +K YP SFIRII
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRII 162          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.074e-66
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRIIRIEQQ 508
            MA  +ISS TVA  +RA  AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM GC D++QVLKE+ E +K YP +FIRII  + +
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNK 166          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.393e-66
Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 2
Query:   11 MASPLISSTTVAT--ANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS +ISS TVAT  A+R   AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM GCTD++QVLKE+ E +K YP SFIRII
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRII 162          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.645e-65
Identity = 118/162 (72.84%), Postives = 139/162 (85.80%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS ++SS  VAT  R+ +AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM GCTDATQVL EV E +K YP ++IRII
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRII 160          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.005e-64
Identity = 117/162 (72.22%), Postives = 138/162 (85.19%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS ++SS  VAT  R+ +AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM GCTD TQVL EV E +  YP ++IRII
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRII 160          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.715e-64
Identity = 117/161 (72.67%), Postives = 132/161 (81.99%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS ++S+  VA  NRA  AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM GCTDA QVL+E+ E+ K YP  + RII
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRII 161          
BLAST of EY684218 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.715e-64
Identity = 116/161 (72.05%), Postives = 136/161 (84.47%), Query Frame = 2
Query:   11 MASPLISSTTVATANRARLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMNGCTDATQVLKEVGEVQKEYPHSFIRII 493
            MAS ++SS  VAT  R+ +AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM GCTDATQVL EV E +K YP +++RII
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRII 159          
The following BLAST results are available for this feature:
BLAST of EY684218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_LACSA5.151e-6976.28Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.164e-6775.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR4.821e-6773.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY8.224e-6776.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.074e-6673.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.393e-6676.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.645e-6572.84Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS0_SOLTU1.005e-6472.22Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_HEVBR1.715e-6472.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.715e-6472.05Ribulose bisphosphate carboxylase small chain 8B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-E01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684218 ID=EY684218; Name=EY684218; organism=Citrus sinensis; type=EST; length=971bp
GCAAGTACCAATGGCTTCCCCTTTGATCTCATCGACCACCGTTGCCACCG
CGAACCGCGCCCGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACAT
TACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGC
CACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTG
TCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTG
GATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGC
ACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAA
CTGCCCATGAATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGG
GGAGGTCCAGAAGGAATACCCACATTCATTCATCCGAATTATCAGAATTG
AACAACAAACGTCAAGTGCAAGGCATCAATTTCCCTTGCTGCCCAGCCAC
CAGGCGTCTAGGTTCCCAAATTAAATTTGTGTAACCCACCCCCTGGCAAA
ATTGATGATTAAATAAAAAGGTAAACCCCCCGAAAGGATCTTTCGGATTA
AGGGGGGTTCGGTTTTGCAATTATAATTTAGTACTTAGACGGCTGGTTCC
GCCAGCCCAAAATTTTTTGGGTTTTCACCCCAACTTTGGGTTTTTGTATT
TTTAAAAAAATTGAATAAATATAAATCCTTTAGATTTTAGATTTAAAAAA
AAAAAAAAAGAAAAAAAAAAGGGGGGAGCCGCCCTAAAAAGACACCTTAT
AATAAGAACCGCATAGGAATGCGAAAACACGAAACTACCTAACATTATGG
AGGATCACAAAAAAAATATAAATACACCAAGCGCCGGACATTTATAAAAA
GAAACAAGAGGATGGGTGAAA
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