EY684209

Overview
NameEY684209
Unique NameEY684209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.404e-49
Identity = 95/166 (57.23%), Postives = 115/166 (69.28%), Query Frame = 2
Query:    2 FVTDYKPLKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK 499
            F  + K  + FIIKSYSED++H+SIKY +W ST +GNK+LD A+     K    PV+L FSVN S  FCGVAEM  PVD+  S   W QDKW G+F +KW  +KDVPN+Q RHI LENNDNKPVTNSRDTQEV LE+  ++L I  +Y    SI DDF  YE RQ+
Sbjct:  382 FDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.206e-48
Identity = 94/166 (56.63%), Postives = 116/166 (69.88%), Query Frame = 2
Query:    2 FVTDYKPLKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK 499
            F  + K  + FIIKSYSED++H+SIKY +W ST +GNK+LD+A+     K    PV+L FSVN S  FCGVAEM  PVD+  S   W QDKW G+F ++W  +KDVPN+Q RHI LENNDNKPVTNSRDTQEV LE+  ++L I  +Y    SI DDF  YE RQ+
Sbjct:  382 FEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.881e-48
Identity = 94/170 (55.29%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK----AMQEKEGK 523
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    PV+L FSVN S  FCGVAEM   VD+      W QDKW G+F ++W  +KDVPNSQ RHI LENN+NKPVTNSRDTQEV LE+  ++L I  +Y    SI DDF  YE RQ+      +E++G+
Sbjct:  411 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 577          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.881e-48
Identity = 94/170 (55.29%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK----AMQEKEGK 523
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    PV+L FSVN S  FCGVAEM   VD+      W QDKW G+F ++W  +KDVPNSQ RHI LENN+NKPVTNSRDTQEV LE+  ++L I  +Y    SI DDF  YE RQ+      +E++G+
Sbjct:  411 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 577          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.881e-48
Identity = 94/170 (55.29%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK----AMQEKEGK 523
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    PV+L FSVN S  FCGVAEM   VD+      W QDKW G+F ++W  +KDVPNSQ RHI LENN+NKPVTNSRDTQEV LE+  ++L I  +Y    SI DDF  YE RQ+      +E++G+
Sbjct:  412 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGR 578          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.161e-47
Identity = 91/158 (57.59%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK 499
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    P++L FSVN S  FCGVAEM   VD+      W QDKW G+F +KW  +KDVPN+Q RHI LENNDNKPVTNSRDTQEV LE+  ++L I   +    SI DDF  YE RQ+
Sbjct:  417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 4.161e-47
Identity = 91/158 (57.59%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK 499
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    P++L FSVN S  FCGVAEM   VD+      W QDKW G+F +KW  +KDVPN+Q RHI LENNDNKPVTNSRDTQEV LE+  ++L I   +    SI DDF  YE RQ+
Sbjct:  417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.161e-47
Identity = 91/158 (57.59%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDMSILDDFDFYEDRQK 499
            + FIIKSYSED++H+SIKY +W ST +GNK+LDAAY     K    P++L FSVN S  FCGVAEM   VD+      W QDKW G+F +KW  +KDVPN+Q RHI LENNDNKPVTNSRDTQEV LE+  ++L I   +    SI DDF  YE RQ+
Sbjct:  417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YD374_YEAST (YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae GN=YDR374C PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.158e-27
Identity = 60/151 (39.74%), Postives = 94/151 (62.25%), Query Frame = 2
Query:   26 KFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQD-KWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYVTDM-SILDD 472
            +FF+IKS S  +V +S   G+W+ST  GNK+L  AY   K+      VFLFFS+N S +FCGVAEM   +  +     W+ + K+   F ++W I++D+ N   +  ++ +N+ KP+T+SRDTQE+    GI ++N+FK   +D+ S LD+
Sbjct:  156 RFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAY---KKLNSGAKVFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITHSRDTQEIPYSIGISIINLFKTQDSDIFSFLDE 303          
BLAST of EY684209 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.643e-14
Identity = 46/140 (32.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:   20 PLKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYCEAKEKQDPCPVFLFFSVNASAQFCGVAEMFGPVDFEKSVDYWQQDKWSGQFPLKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFK 439
            P+++FI+KS +  N+  S + G+W++TP+  +KL+ A+ E+        V+L FSV  S  F G + M   +  EKS D W      G F ++W   + +P     H++   NDNK V  SRD QE++ + G ++L +++
Sbjct: 1302 PIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------MVYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWE 1434          
The following BLAST results are available for this feature:
BLAST of EY684209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YTHD1_MOUSE3.404e-4957.23YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN2.206e-4856.63YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD2_MACFA2.881e-4855.29YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN2.881e-4855.29YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN2.881e-4855.29YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD3_PONAB4.161e-4757.59YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE4.161e-4757.59YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN4.161e-4757.59YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YD374_YEAST8.158e-2739.74YTH domain-containing protein YDR374C OS=Saccharom... [more]
YTDC2_MOUSE4.643e-1432.86Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684209 ID=EY684209; Name=EY684209; organism=Citrus sinensis; type=EST; length=959bp
TTTTGTCACCGACTACAAACCATTAAAGTTTTTCATTATCAAGTCTTATA
GCGAAGATAATGTACACAAGAGCATCAAATATGGTGTCTGGGCCAGCACA
CCAAATGGTAACAAGAAGTTAGATGCTGCTTATTGTGAAGCTAAAGAGAA
GCAAGATCCATGTCCAGTGTTTCTCTTCTTTTCGGTTAATGCTAGTGCTC
AGTTCTGTGGTGTGGCTGAAATGTTTGGTCCTGTTGATTTTGAAAAGAGT
GTGGATTACTGGCAGCAAGATAAATGGAGTGGGCAGTTCCCTCTTAAGTG
GCATATTATCAAAGATGTCCCAAATAGTCAGTTTCGGCACATTGTACTGG
AAAATAATGACAACAAGCCTGTCACTAACAGTCGGGATACACAGGAGGTG
AAATTGGAGCAAGGCATTGAGATGTTAAACATCTTTAAGAATTATGTAAC
CGATATGTCAATCCTGGATGATTTTGATTTCTATGAAGATCGGCAGAAAG
CCATGCAGGAAAAGGAAGGCAAGACAGCAAGCTAGCTTGATGGCTGTAAG
GGTAGTTTGGAGAGAATGATTCATAAAAATTGCATTCACCCTATTCCACT
GAATTTTATCAAGCAAATGTCCAAAAGTTTTGCTCAGTTTGTCCGCTTTG
ATGGAAGGGAAACAAAAACGGGATGGGGTGTAAAAAAAGCCTACTTTCCG
GCCTCCGGGGGCTCCCTGGGGTGCCAAAGGTAAACTTTAAAAAAGCTCTT
TATGCCCTCCTCCCCTTCGGGCCCAGCCCAGTTTGGAAACAATTCTTTGG
GGGGGGAATCCCGGGTTTGGGATTGGTGAAAAAATTTCCATTTCCCACCC
CCTCCGAATTTTTTTTTTTGTTTTTAGAAAAAGGGAAAAATTCTCCGAAT
AGGTCTTTTTGGGGGTTTCATGGGGATATGGATTTGGGGAACCCCCAAAT
ATTAAAAAA
back to top