EY684207

Overview
NameEY684207
Unique NameEY684207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-61
Identity = 95/119 (79.83%), Postives = 104/119 (87.39%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTD 369
            E IAKL+  VAVIKVGAAT+T LEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDAD+RLGADIVQKALVAPA+LI+ NAG+E EVVVE +  SEW  GY AMTD
Sbjct:  371 ERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTD 489          

HSP 2 Score: 70.0922 bits (170), Expect = 1.591e-61
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            YEN+L+AG+IDPAKVTR ALQNAASVA MVLTTQAIV  KPK
Sbjct:  491 YENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPK 532          

HSP 3 Score: 26.5646 bits (57), Expect = 1.591e-61
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  498 RPKIPETAPPQGLM 539
            +PK P  APPQGLM
Sbjct:  532 KPKAPTAAPPQGLM 545          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.970e-61
Identity = 97/119 (81.51%), Postives = 106/119 (89.08%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTD 369
            E IAKLS  VAVIKVGAAT+T LEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDAD+RLGADIVQKALVAPA+LI+ NAG+E EVVVE +K+ EW  GY AMTD
Sbjct:  412 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTD 530          

HSP 2 Score: 68.5514 bits (166), Expect = 2.970e-61
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            YEN++++G+IDPAKVTR ALQNAASVA MVLTTQAIV +KPK
Sbjct:  532 YENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 573          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.524e-59
Identity = 92/120 (76.67%), Postives = 105/120 (87.50%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTDQ 372
            E IAKLS  VAVIKVGA T+T LEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED D+RLGADI+QKAL APASLI++NAGVE EVV+E +K+SEW  GY AMTD+
Sbjct:  367 ERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDK 486          

HSP 2 Score: 69.707 bits (169), Expect = 3.524e-59
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 2
Query:  371 KYENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            KYEN++++G+IDPAKVTR ALQNAASV+ MVLTTQAIV +KPK
Sbjct:  486 KYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPK 528          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.160e-58
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTD 369
            E IAKLS  VAVIKVGAAT+T LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  EDAD+RLGADIVQKAL++PA+LI+ NAGVE EVVVE +  S+W  GY AMTD
Sbjct:  411 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTD 529          

HSP 2 Score: 68.5514 bits (166), Expect = 1.160e-58
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            YEN+ +AG+IDPAKVTR ALQNAASVA MVLTTQAIV  KPK
Sbjct:  531 YENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPK 572          

HSP 3 Score: 22.3274 bits (46), Expect = 1.160e-58
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  498 RPKIPETAPPQGLM 539
            +PK P  A P+GLM
Sbjct:  572 KPKAPAAAAPEGLM 585          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.737e-56
Identity = 93/119 (78.15%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTD 369
            E IAKLS  VAVIKVGAAT+T LEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLI+ NAG+E EVVVE +  SEW  GY AMTD
Sbjct:  409 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTD 526          

HSP 2 Score: 70.0922 bits (170), Expect = 1.737e-56
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            YEN+L+AG+IDPAKVTR ALQNAASVA MVLTTQAIV  KPK
Sbjct:  528 YENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPK 569          

HSP 3 Score: 22.3274 bits (46), Expect = 1.737e-56
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  498 RPKIPETAPPQGLM 539
            +PK P  A P+GLM
Sbjct:  569 KPKAPAAAAPEGLM 582          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.596e-50
Identity = 95/120 (79.17%), Postives = 103/120 (85.83%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTDQ 372
            E IAKLS  VAVIKVGAAT+T LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  VPAI  + +DAD+RLGADI+QKALVAPASLI+ NAG+E EVVVE VK  EW  GY AMTD+
Sbjct:  354 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDK 473          

HSP 2 Score: 42.743 bits (99), Expect = 2.596e-50
Identity = 18/23 (78.26%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  371 KYENMLQAGIIDPAKVTRSALQN 439
            KYEN+++AG+IDPAKVTR ALQN
Sbjct:  473 KYENLVEAGVIDPAKVTRCALQN 495          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.497e-47
Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = 1
Query:   13 EEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTDQV 375
            E IAKLS  VAVIKVGAAT+  LEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+++LGADIV K+L AP  LI+ NAGVE EV+V+ +    +  GY AM D+V
Sbjct:  400 ERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKV 520          

HSP 2 Score: 54.6842 bits (130), Expect = 1.497e-47
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 2
Query:  371 KYENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPK 499
            K EN+L AG+IDPAKVTR+ L N+ S+A ++LTTQA++ +K K
Sbjct:  519 KVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAVMVEKHK 561          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.070e-43
Identity = 68/121 (56.20%), Postives = 94/121 (77.69%), Query Frame = 1
Query:   10 REEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMTDQ 372
            +E IAKL+  VAVIKVGAAT+T L+DRKLRIEDA NAT AA+EEGIVPGGG  L+HLS  V  +K  L + ++++GADIV++AL AP + I++N+GVE  V+VE V+ ++++ GY  +T +
Sbjct:  364 QERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGE 484          

HSP 2 Score: 60.8474 bits (146), Expect = 2.070e-43
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  371 KYENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPKTQNTRNRSAPRSYGG 544
            +YE+++ AGI+DPA V RSALQNA S+A MVLTT+A+V +KP+    +  +AP   GG
Sbjct:  484 EYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPE----KKGAAPDMDGG 537          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.722e-42
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   10 REEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMT 366
            +E IAKL+  VAVIKVGAAT+T L+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K  L +A++++GADIV +AL AP   I+HNAG+E  VVVE V + E   G+ A+T
Sbjct:  365 QERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKEMPFGFDALT 482          

HSP 2 Score: 59.6918 bits (143), Expect = 1.722e-42
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQK--PKTQNTRNRS 523
            Y +M   GI+DPAKV RSALQNAAS+A M LTT+AIV +K  PKT+   +RS
Sbjct:  485 YVDMFAQGIVDPAKVVRSALQNAASIAAMYLTTEAIVVEKPEPKTKTGASRS 536          
BLAST of EY684207 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.722e-42
Identity = 74/119 (62.18%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   10 REEIAKLSLWVAVIKVGAATQTYLEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADDRLGADIVQKALVAPASLISHNAGVESEVVVENVKDSEWTTGYKAMT 366
            +E IAKL+  VAVIKVGAAT+T L+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K KL +A++++GA+IV +AL AP   I+HNAG+E  VVVE V + E   G+ A+T
Sbjct:  365 QERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEMPFGFDALT 482          

HSP 2 Score: 58.5362 bits (140), Expect = 1.722e-42
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  374 YENMLQAGIIDPAKVTRSALQNAASVARMVLTTQAIVPQKPKTQNTRNRSAPR 532
            Y +M   GI+DPAKV RSALQNAAS+A M LTT+AIV +KP+ +     SAP+
Sbjct:  485 YVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPAAG-SAPK 536          
The following BLAST results are available for this feature:
BLAST of EY684207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUB1_BRANA1.591e-6179.83RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA2.970e-6181.51RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT3.524e-5976.67RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH1.160e-5878.15RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.737e-5678.15RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO2.596e-5079.17RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE1.497e-4767.77RuBisCO large subunit-binding protein subunit alph... [more]
CH601_TRIEI2.070e-4356.2060 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_SYNJA1.722e-4262.1860 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_SYNJB1.722e-4262.1860 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-D01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684207 ID=EY684207; Name=EY684207; organism=Citrus sinensis; type=EST; length=927bp
CCCGCGTTCCGTGAGGAAATTGCTAAATTGTCCCTATGGGTTGCTGTTAT
TAAAGTTGGAGCTGCCACACAAACTTATCTTGAGGACCGTAAACTCCGTA
TTGAAGATGCCAAGAATGCAACTTTTGCTGCCATAGAGGAAGGTATTGTT
CCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTGCTAT
CAAGGACAAGCTTGAAGATGCAGATGACCGATTAGGTGCTGACATTGTGC
AGAAGGCACTGGTAGCACCTGCATCACTGATATCTCACAATGCTGGAGTT
GAAAGTGAGGTTGTTGTGGAGAACGTGAAAGATAGTGAATGGACGACTGG
TTACAAAGCAATGACAGACCAAGTATGAGAACATGCTTCAGGCTGGAATT
ATTGATCCAGCAAAGGTAACAAGAAGTGCATTGCAAAATGCGGCTTCCGT
TGCACGAATGGTCTTGACCACTCAGGCTATTGTCCCGCAAAAACCAAAGA
CCCAAAATACCAGAAACCGCTCCGCCCCAAGGTCTTATGGAGGTAAATCT
TAAGAACTCTTCCGAATTTAATTAAGAGTTTTAAAAGAGAAAAAAGGGTT
TTTCTCGCGAAGAACTGAAAAAAAACAAGTTTGCCTAAATTGAAAAACAC
AACGCGACTTTTTCTGATTAGGATAGAAATTCGATCAAAGTTGCTGAGAT
CACTATGTAGAATAGTTAATGATCGAACTTCAAAATAGACGATGTATTAG
AACGAATGGTGGGACATCTTTTGAGAATTATCTTTATACCTAGGAGCGGA
GAGTATAACTTTTATAAAGTGATACCTAAAACTATGCCAGGAGCAGCTGA
ATAAACATTGTGAGATAAAGACCCGAAGATACCCAATTAACTCTAGAAAC
ACACCGCATGAAAAAGCGAACAAAAGT
back to top