EY684201

Overview
NameEY684201
Unique NameEY684201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1039
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684201 vs. ExPASy Swiss-Prot
Match: LYM2_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.004e-35
Identity = 76/146 (52.05%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  265 GVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFELIAQKFGTDRDTLKKLNGIHDDNKLIAGEPLDVPLKLATHP*KLDSFDNYLRVANGTYTFPATS 702
            GVS++   YT+KKDD L F+A  IFG L+ Y+KI E N I +P+ I+IGQ   IPLPCSCD ++   VVHYAHVV+ GSS   IA +FGTD  TL +LNGI  D++L+A +PLDVPLK  +   + DS D  L ++N +Y F A +
Sbjct:  102 GVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANN 247          
BLAST of EY684201 vs. ExPASy Swiss-Prot
Match: CEBIP_ORYSJ (Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.550e-26
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  256 KCNG---VSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFELIAQKFGTDRDTLKKLNGIHDDNKLIAGEPLDVPLKLATHP*KLDSFD-NYLRVANGTYTFPA 696
            +CNG    SD++P+Y V+  DGLD IAR +F   + YQ+I  ANNI +P+ I + Q L IPLPCSCD  + + V+H A+ V +G +   IA K+G    TL   N I D  KL  G+ LDVPL +        S D N + + +GTY F A
Sbjct:   99 RCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTA 249          
BLAST of EY684201 vs. ExPASy Swiss-Prot
Match: LYM1_ARATH (LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.856e-11
Identity = 44/138 (31.88%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  289 YTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSC-DDVDNA-KVVHYAHVVEEGSSFELIAQKFGTDRDTLKKLNGIHDDNKLIAGEPLDVPLKLATHP*KLDSFDNYLRVANGTYTFPA 696
            Y  +  D L  IA +++G L+  ++I EAN++++P L+ +G +L IPLPC+C +  DN+   V+ ++VV+E  +   IA+++ T    L  +N +   + + +G+ L VPL          + D  L V NG+Y   A
Sbjct:  112 YKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPD-VSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAA 248          
The following BLAST results are available for this feature:
BLAST of EY684201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LYM2_ARATH7.004e-3552.05LysM domain-containing GPI-anchored protein 2 OS=A... [more]
CEBIP_ORYSJ4.550e-2643.05Chitin elicitor-binding protein OS=Oryza sativa su... [more]
LYM1_ARATH1.856e-1131.88LysM domain-containing GPI-anchored protein 1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684201 ID=EY684201; Name=EY684201; organism=Citrus sinensis; type=EST; length=1039bp
AAAAATAATCGGAACTGCGGTACGGTCCGGATTCCGGGTCGACCACGCGT
CCGCAGATTTTGTTCATACATGACCCCTTTATTGCTTTTCTACCGCGTTA
ACGTGTTCAAACTCATAACATTTTGTACTAATCTTAGGAGATTTTACTAA
TTAAACTAACTAGCATTTATGTGTTACATTTTTCAACTGTTGTTCGATGC
ATTCGCGAACTTCATGTCTTGATTTACAATGTTCAATGCAAAATAATGAT
ATGACAAATGTAACGGGGTGTCCGACAAAGTGCCAGTGTACACGGTAAAG
AAAGATGATGGCTTAGACTTTATAGCAAGAACAATTTTCGGACAATTGCT
GAAGTACCAGAAAATTGTGGAGGCTAATAATATTAGCAACCCAGATTTGA
TCCAAATTGGCCAAAATTTGACAATTCCATTGCCCTGTAGCTGTGATGAT
GTTGATAATGCCAAGGTGGTTCACTATGCACATGTGGTGGAAGAGGGGAG
CTCGTTTGAGTTAATTGCTCAGAAGTTTGGAACCGATAGAGATACTTTGA
AGAAACTTAATGGCATTCATGATGATAATAAGCTTATTGCCGGCGAACCA
CTTGATGTTCCTCTTAAGCTTGCAACTCATCCATAAAAGCTGGACTCATT
CGACAACTATTTACGTGTTGCTAATGGCACTTATACATTCCCTGCCACCA
GCTGGTGGGGAATGGCCAGTGTGAAGCCAAAAACCAATGGAAATTACAAT
GGAAGCCTTTCCCAATTTTCAACCCATCTCCCCCCACTCTCCGGGGGAAA
ACTGGCCCGCCTATCCGGGGGGGGAAATTCAAAAATCTTTTACCCTTGGG
GAAAAAATACCCATTTCAAAAAAAATTTGAATACGGGAAAATTTGGGGAA
AATTGGCGGGGGTTTTAAAAAAACCCGGGCCCCCCCCCCCACAAACACGG
GGAATCTTTTTTTACCCCCTTTTGGCCCAAAAAGCCCCCATGAAAAAAAA
ACCCCTTTCCTAAGAAATTATGGGGGGAAGGTGGGGAAC
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