EY684181

Overview
NameEY684181
Unique NameEY684181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684181 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.193e-44
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:   12 GNYGSPALLKDDPKALXXIHPLNYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINY 374
            GNYGS A    DPKA   I  +NYRD+VA+NVSMAARLEGI  DPFTGICI+N TI +AAK KKVPWTC D+ G++SGVTP PC  LPDQGPEK   C+FP ESLPID VE++KC+Y INY
Sbjct:  369 GNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNFPAESLPIDTVELQKCSYGINY 489
The following BLAST results are available for this feature:
BLAST of EY684181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI5.193e-4468.60Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-A07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684181 ID=EY684181; Name=EY684181; organism=Citrus sinensis; type=EST; length=515bp
CCCCCTTCCGTGGCAATTATGGATCGCCTGCCCTTTTAAAAGATGATCCA
AAGGCTCTGNCCGNGATTCACCCCCTTAATTATAGGGACATTGTGGCGGA
TAATGTGTCCATGGCTGCTAGATTAGAGGGAATTTCCGGTGACCCATTTA
CAGGTATTTGCATTGCTAATGCGACAATTGGAATGGCGGCCAAGCATAAG
AAAGTACCGTGGACTTGTGCTGATATTGGAGGGATGACCAGTGGCGTGAC
TCCTCCACCCTGTGAATTGTTACCTGATCAAGGACCTGAGAAAATAAGAG
CCTGTGACTTCCCGACTGAGAGTCTACCAATTGATATGGTGGAGATGAAA
AAGTGTACTTACAGAATTAATTATTTGTGAATTTCCTTTGCTAGTATAAG
CAGGACAACAGCTTCTGTTTCTCTACGCTATGCTACAACAGTTTTTATAC
TTTAATGCCTGTTTAAGGCATAAGTGTTTTATTTAATCTTATAATTTTTT
AAAAAAAAAAAAAAA
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