EY684178

Overview
NameEY684178
Unique NameEY684178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1113
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684178 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.792e-31
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:  193 GFTNLDENLLFEVLKHADARTLARAACVNKLWHKTAHDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLRSLYLHQLPQAATRA 456
            GF+NLDENL++EVLKH DA+TLA ++CV+K+WHKTA DERLWELICTRH+ N+GC   QLRSVVLALGGFRRL SLYL  L +   RA
Sbjct:   31 GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKPNPRA 118
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BLAST of EY684178 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.573e-19
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:  202 NLDENLLFEVLKHADARTLARAACVNKLWHKTAHDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLRSLYLHQL 435
            +L E+L+FEVL+ A+ARTLA AACV++ W + A DERLWE  C R +AN+G + +QLR+VVL+LGGFRRL ++Y+  L
Sbjct:   75 DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPL 152
The following BLAST results are available for this feature:
BLAST of EY684178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GID2_ARATH1.792e-3171.59F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
GID2_ORYSJ1.573e-1957.69F-box protein GID2 OS=Oryza sativa subsp. japonica... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-A04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684178 ID=EY684178; Name=EY684178; organism=Citrus sinensis; type=EST; length=1113bp
AACACTTTCCATTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC
TCTGCCTCTCCAATTTTACTTTATGAAGCGTATGGGTCTTGATTCCCCGG
TCACCGCCGAAGACAAGCAAAAGATGAAGAAAGTCAAACAAGAGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGGAGAGCAATCCAAAGAAACTGGCTTCAC
AAATCTGGACGAGAACCTTCTGTTCGAGGTGTTGAAACACGCGGACGCCA
GGACTTTGGCGCGGGCGGCCTGCGTCAACAAGCTCTGGCACAAGACGGCT
CATGACGAGCGCCTCTGGGAGTTGATCTGCACCCGCCACTTCGCTAACGT
TGGGTGTGCTACCCAACAGCTGAGATCCGTGGTCCTGGCTCTCGGTGGCT
TCCGTCGCCTTCGGTCCCTCTACCTCCACCAGCTTCCCCAGGCTGCCACC
CGGGCGCTCCGCCTTCTTCCTCCATGTGGGAATCCTCTCCCGCGCGGCTG
GGGCCCCAAGAACCCCGGCCCCCTGGGGGGAGAGACGAGGTCCCATCTCC
TCCTTGGCTCTGCTTTCCCGTTCGTTACTTGGAAATGATGACTATTAAGG
GATCTTACCAAGTCAAGGATATATTTTACTCTATCCCCGCGGTGGTCGAA
TTAAGCTATGAAAGATCGGGATTTTTCCCCCCCTTTTTTATCCCCCTTTT
GGGCATGGAGGAGTTTATGATTTTACTTTTTTTTTTTTATTTTGTTTAAT
AAAGAAAAAAGTAAAAAAAGTCACTTTTTTAATAGAGAGAGTGGAAATCA
GGGGGAAATAATAAATGAGGGGTGGAGTGGTTGTTGCATGGAAGTTTGTG
CTAACAAACTATGAGGAAGTTGGGGCGAAATGTCGGGGCCGAAATCATAT
GATCTCTGGAATACTCCTGCGGTGTGTGTAATTTTATGATCATGGGTCGG
GGGGTGAGGAGGGGGGGTGTCGAGATGTGCAATAGGAGTGTGGACATTAC
TTTACTGTGGGCGCGGGGGACGAGCTAATGAATGACAGCGCCGTTCACCG
TTATGTGCCGGACCATTTGAATATTTATAGCTACTGTCCAAAAACACGAA
CCGTCCAATCCCA
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