EY684163

Overview
NameEY684163
Unique NameEY684163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684163 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.771e-27
Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 2 
Query:   65 SRRTLVRDIYQLYLAEKAALKNMFIASKYRVSITTDTWTSIQNFNYMVVTAHWVDPNWKLQKRILNFFQITS-HKGDSIGKLIEKCLLDWGIE-KVMTVTVDNASANDVAVNYLKKKLKNWKGDAMILDGDCLHLRCCAHIVNLIVTEGLKEMHDSIASIRNAIMYVRSSGLR 577
            SR T  + I  LYL EK  L       + R S T D WTS QN +YM VT HW+D +W LQKRI+ FF +   H G  + +     ++ W IE K+  +++DNASAN+VAV+ + + L++   + ++ DG   H+RC  HI+NL+  +GL  +  +I  I+  ++ V+SS L+
Sbjct:  211 SRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSN-LVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQ 382
[Close]
BLAST of EY684163 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.771e-27
Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 2 
Query:   65 SRRTLVRDIYQLYLAEKAALKNMFIASKYRVSITTDTWTSIQNFNYMVVTAHWVDPNWKLQKRILNFFQITS-HKGDSIGKLIEKCLLDWGIE-KVMTVTVDNASANDVAVNYLKKKLKNWKGDAMILDGDCLHLRCCAHIVNLIVTEGLKEMHDSIASIRNAIMYVRSSGLR 577
            SR T  + I  LYL EK  L       + R S T D WTS QN +YM VT HW+D +W LQKRI+ FF +   H G  + +     ++ W IE K+  +++DNASAN+VAV+ + + L++   + ++ DG   H+RC  HI+NL+  +GL  +  +I  I+  ++ V+SS L+
Sbjct:  266 SRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSN-LVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQ 437
The following BLAST results are available for this feature:
BLAST of EY684163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE3.771e-2738.73Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE3.771e-2738.73Putative AC transposase OS=Zea mays PE=2 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-G10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684163 ID=EY684163; Name=EY684163; organism=Citrus sinensis; type=EST; length=978bp
GGAAGTAGAGTCTTATGGGTTTCATCTTTTGTGCGATAAACTTTGTCTTA
GATTTGGCCCTCCTTCTAGGAGAACACTTGTTAGAGATATATATCAATTG
TATTTAGCTGAGAAGGCAGCATTGAAAAATATGTTTATTGCAAGTAAGTA
TAGAGTTTCTATTACTACAGACACTTGGACTTCCATACAAAATTTTAATT
ATATGGTTGTGACAGCCCATTGGGTTGATCCTAATTGGAAATTACAGAAG
AGGATTTTGAATTTTTTCCAAATAACAAGCCACAAAGGGGATTCAATTGG
CAAGCTCATTGAAAAATGCTTGCTTGATTGGGGTATAGAAAAAGTGATGA
CTGTTACAGTTGATAATGCGAGTGCTAATGATGTTGCTGTTAATTATTTG
AAAAAAAAGTTGAAAAATTGGAAGGGCGATGCAATGATTTTAGATGGAGA
TTGTTTACATTTACGTTGTTGTGCCCATATTGTTAATTTGATTGTGACTG
AAGGGCTTAAAGAGATGCATGACTCAATTGCTAGCATTCGCAATGCAATT
ATGTATGTGAGGTCTTCTGGTTTGAGGGTTGCATAATTTTAAATCATGTG
TTGAGAGAGAGAAAAATTGAAAATAAGGGACTTTTTACCATATGATGTGC
CCCACTAAAAGGGAAATTCCCCCTACACTAGGTTGGCAAGAACCCTACCC
TTTTCAAAAAGGCTTTTTGAAAAGGCTCCGAAAAAAAAGAACATGGAGGA
CCCATATTTGATTTTTTTTTCATGAAAAGAAAGGAAAAAAAAATCGGGCC
CCCCCACGGTTAAAAAATGGGAAAAAGCGCGAAAAAATTTTTTTGAGTTT
TTTAGAAATTTTTCCAGAGGAGGTTCCAGGTGGGGTTTCCGGGGCCCCCT
ATACCAAATATACACCCAAACACGTTGTATTTTTTCACCCTCTTTTGAGC
CCCATTATCCAAAACCCCCTAATGTTAA
back to top