EY684160

Overview
NameEY684160
Unique NameEY684160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1032
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684160 vs. ExPASy Swiss-Prot
Match: C3H30_ORYSJ (Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica GN=Os04g0663200 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 8.762e-38
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  196 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVCLLGEESQKVEI*NPRERRVLEAVYPRPSAIPPKP 597
            M G  +S+R+SWA   NLC+ RLFLSE+SPSQ GL  QD+LQAK SWL H+ G  +DD LPPGFE   P N  ++++S+IPLI+W+CPP   L+  W + + GEES+++EI N R    LEA+YPRPS IPP P
Sbjct:    1 MMGSRRSRRVSWASGGNLCKVRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQIPLIRWKCPPHIVLEQDWHI-VAGEESREIEIQNERINGALEAIYPRPSNIPPNP 133          
BLAST of EY684160 vs. ExPASy Swiss-Prot
Match: C3H6_ARATH (Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.676e-34
Identity = 76/134 (56.72%), Postives = 93/134 (69.40%), Query Frame = 1
Query:  196 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVCLLGEESQKVEI*NPRERRVLEAVYPRPSAIPPKP 597
            MR LHK  R+SW PD  LCQ RLF+SE+SPSQ+G  +QDHLQAKS   SH     +DD LPPGF G    N+ Q+ LS+IPLIKW+C  +  LD  W+V + G+ES++VE  N RE RVLEA YP  S+IPP P
Sbjct:    1 MRALHK--RVSWPPDFKLCQVRLFISEDSPSQVGSESQDHLQAKSPLASHP----SDDNLPPGFGGPFSANESQIKLSDIPLIKWKCSVQILLDREWKV-VAGDESKEVEAQNERELRVLEAFYPGASSIPPNP 127          
BLAST of EY684160 vs. ExPASy Swiss-Prot
Match: C3H45_ARATH (Zinc finger CCCH domain-containing protein 45 OS=Arabidopsis thaliana GN=At3g51180 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.608e-15
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  211 KSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKW-RCPPRFQLDITWQVCLLGEESQKVEI*NPRERRVLEAVYPRPSAIPPKP 597
            K  R+SW P   LCQ ++F +E+SP+ +    Q H        S+ +       LPPGFEG H     + N+S IP IKW R PP+F ++ TW V   G  S + +  N R  +VLEA+YP  SAIP +P
Sbjct:    8 KKPRVSWPPGPKLCQVKVFRTEDSPANVASQPQRH--------SYPSRKPRGPDLPPGFEGNH--YAVKPNVSNIPRIKWKRPPPKFSVNDTWLVG-CGGGSSEWQNENLRISKVLEAIYPHRSAIPSRP 126          
The following BLAST results are available for this feature:
BLAST of EY684160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C3H30_ORYSJ8.762e-3855.22Zinc finger CCCH domain-containing protein 30 OS=O... [more]
C3H6_ARATH7.676e-3456.72Zinc finger CCCH domain-containing protein 6 OS=Ar... [more]
C3H45_ARATH1.608e-1540.00Zinc finger CCCH domain-containing protein 45 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-G06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684160 ID=EY684160; Name=EY684160; organism=Citrus sinensis; type=EST; length=1032bp
ACGGACGCGTGGGAAAAATCAGCAAGGTATTTAAAATTCAGTAGTGATAA
AGAGTCTAGCTAGGCTTTCGAATCGGAGATATATTTCAAAAAAAAATCTT
CAATTGAAAACTGCTACAACTACTACTTGCATTATATAACATTTACTGAG
AATCGAAGCTGGAAAGAAGTTATTTTTGAGAAATATTGTCCAAATATGCG
AGGATTGCACAAATCGAAAAGGATTTCTTGGGCACCAGATGTAAATCTTT
GTCAGGAAAGGCTGTTTTTGTCTGAGGAGTCTCCTTCACAAATTGGATTA
GGTGCCCAAGATCACCTTCAAGCAAAATCATCATGGTTGTCCCATTCAAA
TGGCGTTGGCAATGATGACATTCTTCCTCCTGGTTTTGAAGGAGGTCATC
CCCCAAACCAGTTCCAAGTTAACTTGTCTGAAATTCCCCTAATCAAATGG
AGATGTCCTCCCAGGTTCCAGTTGGACATTACTTGGCAAGTTTGTTTGCT
GGGGGAGGAAAGCCAAAAAGTGGAGATTTGAAATCCAAGAGAAAGAAGAG
TGCTTGAAGCAGTTTATCCGCGCCCATCTGCCATTCCTCCAAAACCCCCC
TGTTTCAATGGACATAGGAGCAGTCCCAATACAGGTGATCACCAAATTCC
TTTTGATACCCATTAACTCCCATTGAAAAAAGAAAAAACAACCCCTTTAA
TGGCCCATCTGGGTTTAAAAACCCCATTTAACATTTTCCCGTGGGCCTCC
AAGCCCCCCATTTTTGGGCCCGGGGAGTTCCCGTGGCCTTCCTAAGGGCA
GCAAAACCAACCCCTTGAAAAAAGGTCTTTGGACAACAAGAAAAACAAGC
GTTCGGGAAAGGGCCCTTTTGGGTTCCAACCCCACAAGTAATTTGGCCGG
GCCGCTTCTTCCTGCCCCTCTAAACCCAAATTTTTCACAAAAAAAAAGAG
GAGAAAATGGGTGAAATTTTGGTTGGTGTAGCGTGTGTTTTGTGTTTATT
TTAAAAAACACCCCCCACTCCGACCCCACCCC
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