EY684159

Overview
NameEY684159
Unique NameEY684159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1040
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.192e-42
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKGRRVATNVLP 517
            +PVASTINTLAGALY+VF ASPD+AR+EMR ACFDYLSLGGI S GP++LLSGLNPRP+ L  HFFAVAIYGVGR+L+PFPSP R W+GAR+I  ASGIIFPI+K   +     P
Sbjct:  412 KPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFP 526          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.912e-24
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKGRRVATNVLPCNCS 529
            +P+++T+NTL  A  QV  AS DEA++ MRQ C+DYLS GG  +SG ++LL G+NPRP+ L++H  A+ +  +G +L PFPSP R W   R+   A  ++ P +K   V+  + P N +
Sbjct:  386 KPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAA 504          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.563e-24
Identity = 48/119 (40.34%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKGRRVATNVLPCNCS 529
            +P+++T+NTL  + +QV  AS DEA++ MRQ CFDYLS GG  +SG ++L+ G+NPRPL L +H F +++  +G++L PFP+P R W   R++  +  ++ P +K   +   + P N +
Sbjct:  388 KPMSATVNTLGNSFWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSPTNAA 506          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKGRRVATNVLPCNCS 529
            +P+++T+NTL  A  QV   S DEA++ MRQ  +DYL  GG  +SG ++LL G+NPRPL LV+H  A+ +  +G++L PFPSP R W   ++   A  ++ P +K   V+  + P N +
Sbjct:  387 KPMSATVNTLGNAFSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAA 505          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.515e-21
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGI 469
            +P+++T+NTL  A  QV  AS DEA++ MRQ CFDYLS GG  +SG ++LL G+NPRPL L+FH   + +  +G++L PFPSP   W   R+   A G+
Sbjct:  387 KPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLLSPFPSPLGIWHSLRLF-GAEGV 484          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.086e-19
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  173 QPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSA 460
            +P+++T+NTLA    QV  A+ DEAR+ MRQ CF+YL+ G   + G +++L G+NP PL LV H  A+ +  +G +L PFPSP RFW   RI+  A
Sbjct:  386 KPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRILAWA 481          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.901e-14
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  191 INTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIM 484
            +N LA ALY++FSA+ D  R ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VA+Y         P    P   +    I+  A  IIFP++
Sbjct:  465 VNVLAQALYELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALFSSGAILYKACSIIFPLI 564          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.901e-14
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  191 INTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIM 484
            +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL L+ HFFAVAIY V       P    P      + ++  A  +IFP++
Sbjct:  466 VNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYFCFKSEPWITKPRALLSSSAVLYKACSVIFPLI 565          
BLAST of EY684159 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.518e-13
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  191 INTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIM 484
            +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VAIY         P    P   +    ++  A  I+FP++
Sbjct:  464 VNVLAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILFPLI 563          
The following BLAST results are available for this feature:
BLAST of EY684159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ERG1_PANGI1.192e-4272.17Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.912e-2442.86Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA5.563e-2440.34Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH1.789e-2241.18Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG11_BRANA1.515e-2148.48Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH1.086e-1946.88Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_RAT8.901e-1443.56Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_HUMAN8.901e-1443.56Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE1.518e-1341.58Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-G05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684159 ID=EY684159; Name=EY684159; organism=Citrus sinensis; type=EST; length=1040bp
CCACGCGTCCGTGATTATGCTGCTTGCACATGGAAAGTTATTCACCTACC
AACCTCATGGGTTCTTTAGATTTTATTAAAATATATTCAAATAACATTCT
TCAATTTCCCTTCACTAATGATAGAAGTCTATATAACTTTAGTAAACTCG
GTTCCTCTGATGTTCGGGATTGCAGCCAGTGGCATCCACCATCAATACCT
TGGCCGGTGCCTTGTACCAGGTATTTTCTGCATCTCCTGATGAAGCAAGG
AAGGAAATGCGCCAGGCTTGCTTTGATTATCTAAGTCTTGGAGGTATCTT
CTCGTCAGGACCAGTCTCTCTGCTCTCAGGCTTAAATCCCCGTCCATTAA
TCTTGGTTTTCCATTTCTTTGCCGTTGCAATATATGGTGTTGGTCGAATT
TTACTGCCATTTCCTTCACCTTATCGCTTCTGGATTGGAGCTAGAATAAT
TACGAGTGCATCGGGAATCATCTTCCCTATTATGAAAGGCAGAAGGGTTG
CGACAAATGTTCTTCCCTGCAACTGTTCCTGCATATTATTACCAAGCTCC
CACCCTAGTAACTGAAAATCTGAGTTTGCAGAAAATTGAAGTATTAACCA
ATTAACATCCGTCGAGACAAGCTAAGGCTGCACTGGGTATCCTGCCTCCC
CTTTGGTTCATTTCCTTGAAGGGAAGCCAATGGCCTAAAAAAAATGAATG
TGGGGGAACACATTTTTTTTTTTGGTAGTTTTGGTTTTGGATTTAAGGGG
TTTTTTTGGTTTCTTAAAGGAAAGGTAAAAAAAAACAATCACCCGGAAAA
TTAGGGTAAAAAATTTTTTTTTTTCCCTGAACTTTTTTTCTTAAAGGATT
GGAAAAACAAAAAAAAGGGGTTTCAAAAGTGTTTTGGGATTTTTGGGGGA
AATAAAAAGACCCTAAAATTCTCCCGGGGGCTGATTGTAAGAAAACCCCC
CTGGGAACCCATTTTGTGTTTAAATGAAAAAAAAAAAAAAAAAAAGAGGG
GGGGGGCGGGCGCAGCTCCTATAAGAGAGAAGAGCAGAAC
back to top