EY684146

Overview
NameEY684146
Unique NameEY684146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 3.078e-92
Identity = 152/167 (91.02%), Postives = 159/167 (95.21%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFREL 502
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGP   L
Sbjct:   78 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENL 244

HSP 2 Score: 38.5058 bits (88), Expect = 3.078e-92
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  508 NHLADPGQHNAWAYATNFVPGK 573
            +HL DP  +NAW+YATNFVP K
Sbjct:  246 DHLVDPVNNNAWSYATNFVPRK 267
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.358e-91
Identity = 164/189 (86.77%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   78 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.358e-91
Identity = 163/189 (86.24%), Postives = 169/189 (89.42%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFREL--------GPTTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   78 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPG 266
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 2.317e-91
Identity = 163/189 (86.24%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   78 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 266
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.951e-91
Identity = 163/189 (86.24%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   76 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.951e-91
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   85 DYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 5.161e-91
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   78 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 5.161e-91
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   77 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 265
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 6.740e-91
Identity = 162/189 (85.71%), Postives = 167/189 (88.36%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   77 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
[Close]
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 6.740e-91
Identity = 161/189 (85.19%), Postives = 168/189 (88.89%), Query Frame = 2 
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   76 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
The following BLAST results are available for this feature:
BLAST of EY684146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB22_PETSP3.078e-9291.02Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2G_SOLLC1.358e-9186.77Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC1.358e-9186.24Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2A_SPIOL2.317e-9186.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_SOLLC3.951e-9186.24Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY3.951e-9185.71Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB24_TOBAC5.161e-9185.71Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC5.161e-9185.71Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_PETSP6.740e-9185.71Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC6.740e-9185.19Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-F03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684146 ID=EY684146; Name=EY684146; organism=Citrus sinensis; type=EST; length=1025bp
CGACTACGGTTGGGACACAGCCGGGCTTTCAGCTAACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAG
AATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTG
GCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAG
CTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTT
TGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTTAGAGAAC
TTGGCCCAACCACTTGGCCGACCCTGGTCAACACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGGAAAGGGGAGCTTCGGGTTGAATAACATTAG
TAACCTGGGAAATTGGAATTGAATATGGTTGGGTATTTGGAGGGGACCCT
ATTTCAACTTTGGAAAAAATGGTGAATTATTGAAATGGGACTGGGAACTA
ACCTTTTGAAGGGGGATTTGTATTTCCTTTCTGATAAAATTTAAAAATAA
GGGTGCGGCCTTTCCTATCGGATCCCGCTTTTTATTGTAGGCCTACGAAG
CACAAACAACTCAGATCCATCCTAGAAGCGGGTCCCCGAATTCTGCACAT
TTACAGGAGGGCCGGTTTATTCTATAATTAGACACGAAGAGCAGGAAAAA
AACAACGATGGGGCTAACATCGCCACCTATTGTTTTTTTTCGAATTATGG
GCTCTGCAATCACTCTCCTCCTTTTTACGCCAATGTCGTGTTGGCTAGCG
TGATAGACATGGGAACAGATAATAG
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