EY684143

Overview
NameEY684143
Unique NameEY684143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1009
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684143 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.712e-39
Identity = 92/160 (57.50%), Postives = 111/160 (69.38%), Query Frame = 1 
Query:  127 SNSNTQF-----NGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLESFNGLCWLGNLLCXXXXXXXXXXXXXXXGREIVVEGSRGILPKQK 591
            S+S TQ      +GR  ++RRR  +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLE+       GN +                G EIV EG R  L  +K
Sbjct:   21 SSSRTQCPAPFTHGRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYV-SGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKK 178
[Close]
BLAST of EY684143 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.527e-38
Identity = 88/158 (55.70%), Postives = 109/158 (68.99%), Query Frame = 1 
Query:  130 NSNTQFN----GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLESFNGLCWLGNLLCXXXXXXXXXXXXXXXGREIVVEGSRGILPKQK 591
            +S TQ+     G+  ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLE+       GN +                G +IV EG R  L  +K
Sbjct:   34 SSRTQWTQLSPGKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYV-SGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKK 189
The following BLAST results are available for this feature:
BLAST of EY684143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGL1B_ARATH7.712e-3957.50PGR5-like protein 1B, chloroplastic OS=Arabidopsis... [more]
PGL1A_ARATH8.527e-3855.70PGR5-like protein 1A, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-E11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684143 ID=EY684143; Name=EY684143; organism=Citrus sinensis; type=EST; length=1009bp
CTCTATTTTCAAATGGCTGGCAAAGTAGCCTCTGGTTTTACCCCTCAGGC
TCAGCGCGTCTTCGCTGTCCCTGTGCAAAAGCCAGCTGCAGCCTTGGCTC
CTTTTCCATCCTCTTCAAGGGCTCACTCAAATTCAAATACTCAGTTCAAT
GGAAGGCAGTTTACTGTTCGACGCAGATCTTTTGTACTGCCCAGCAAGGC
TACTACTGACCAACAAGGTCAGGTTGAGGGAGATGAGGTAGTCGATAGTA
AAATTCTGCAATATTGTAGCATTGACAAGAAAGAGAAAAAGTCATTGGGT
GAACTAGAACAAGAGTTTCTTCAGGCACTGCAAGCTTTCTATTACGAGGG
AAAAGCTGTTATGTCAAATGAGGAATTTGATAATCTTAAAGAAGAACTGA
TGTGGGAAGGAAGCAGCGTCGTCATGCTAAGTTCTGCTGAACAAAAGTTT
CTCGAAAGCTTCAATGGCTTATGTTGGCTGGGAAACCTATTATGTCGGAA
GAAGAGTAAGATAAATTGAAGCAGAAACTAAAAATGGAAGGGAAGGGAAA
TTGTGGTTGAGGGGTCACGGGGCATTCTTCCGAAACAAAAAGGATTAAAG
CCGACCTGTCAGTTTGAAATAAACTCAAAAGGGTCCCTTTTAAAGGTGGC
CAAAACAGGTTGTTTGACATTGGAATGGTTTTTTCTACCAGGGAGAAAAA
AAAACAGGAAATTAAAATTCCAAAAATCCTATTTGGAAGATTCACGAAAA
ACCAATCAAGTATTAATTTTTTAAAAGAGAGTTGAGCTGGACGGGAGCAT
TTGAAACAAATGTCTATTTTATAACCCGTACCCAACAAAAAAATCAATGG
TGATTTCAAAAAAAGAAAACAATTCTACAAATTATGTTGAAAGGGACCTA
CCGAAGTACAGAAATGAAAGATGGATAATCAAGAAAGAAGAGTGAAGTGG
TATGTATTGTATACTAGTCTGAGTGCAAATGATAAGAGACAAGACAAATT
CAGGCATAC
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