EY684128

Overview
NameEY684128
Unique NameEY684128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length989
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684128 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.031e-19
Identity = 41/58 (70.69%), Postives = 54/58 (93.10%), Query Frame = 3
Query:    9 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 182
            + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   62 FNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of EY684128 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.032e-17
Identity = 37/58 (63.79%), Postives = 50/58 (86.21%), Query Frame = 3
Query:    9 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 182
            YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   54 YKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of EY684128 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.282e-14
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    6 KYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 188
            ++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   58 EFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of EY684128 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.857e-14
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    6 KYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 170
            +YKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   62 QYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of EY684128 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.418e-13
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 KYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 176
            ++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   59 EFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
The following BLAST results are available for this feature:
BLAST of EY684128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN5.031e-1970.69HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI8.032e-1763.79HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE1.282e-1459.02DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA2.857e-1465.45HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT1.418e-1361.40HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684128 ID=EY684128; Name=EY684128; organism=Citrus sinensis; type=EST; length=989bp
CGTGAAAATACAAGAAGGATCATCCTAAGAACAAATCAGTTGCTGCTGTT
GGTAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATAAAGC
ACCGTATGTTGCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAGGATA
TGAAAAACTACAATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGAAGAA
GAGGAGTCTGAGAAGTCTATGTCAGAGGTGAATGATGAGGATGATGATGA
AGAAGGCAGTGGCGAGGAGGATGATGATGAATAGAAGTTGAAGGAAGAAA
TTAGCATAGTCATGTTAGGCTGTGACAATGTTTCAAACAACATATGTTAA
TGCTTTGTGCTTCCATGTTAATTTTTTTGGATGCTTTCATCATCTTCATC
ATCATGTAAGAGAATCGTGTTGCTTCTCCCTCGACATTTTCTTATGCCTG
CCTTTCGAAGAATTAATAGCTGTAGGTGGGAGATTCACTGCTCTATATGT
ACTGTGTTCTAAAGCTTAATGATTTAGCTAAGGCGTTCCATCGTTTGTAG
AAAAAAAAAAAAAATAAAAAAATGAAACATTAAAAGTATGAAAAGAAGGA
GAACTAGAATCGAAAGAAGAAGAAACCTGAATATCATTATAATAGAAGTC
AAAGATAGTTAAGAATGAAGAAGAAGAATCAGAAGTGCGTGAAGTTAGCT
TTTCGATACAATTGGTTGTGTAGAGTGGGGGTATGTGGGGAGAGGCGTGA
ACCGAGTAAGTACAATCTCTGGAGGAGTGAAGGATTCCTGTAATAACTCG
TACATTAGGGGCTGCTCAGCGAATTGAACGCGTCAGACGAGGTATAGAGA
ATAACAAGCGGAGAAACAGACAAGTAGGAATATAAATCAAGATTACTGCG
AGATATAATTCAGATTCGTGTACCTGCGAGATTGTAAGCGAAGGTAACTG
TGCAATCGCAATTGCGTACCACCCATATAATTCAATATT
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