EY684116

Overview
NameEY684116
Unique NameEY684116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 6.499e-62
Identity = 107/140 (76.43%), Postives = 117/140 (83.57%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFY-GKAAQ 419
            FYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLAD+Y+SEAALG+AN DAI+ G FY G+AAQ
Sbjct:  303 FYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQ 442          

HSP 2 Score: 45.0542 bits (105), Expect = 6.499e-62
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 1
Query:  427 NVPVPERCTDPTAENFDPTARNDE 498
            NVPVPE CTDP A N+DPTAR+D+
Sbjct:  446 NVPVPEGCTDPQATNYDPTARSDD 469          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.105e-61
Identity = 99/139 (71.22%), Postives = 119/139 (85.61%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYGKAAQ 419
            FYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQ
Sbjct:  294 FYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQ 432          

HSP 2 Score: 46.2098 bits (108), Expect = 1.105e-61
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  427 NVPVPERCTDPTAENFDPTARNDE 498
            N+PVPE CTDP A+NFDPTAR+D+
Sbjct:  436 NLPVPEGCTDPVAKNFDPTARSDD 459          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.193e-61
Identity = 101/139 (72.66%), Postives = 110/139 (79.14%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYGKAAQ 419
            FYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQ
Sbjct:  303 FYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQ 441          

HSP 2 Score: 51.2174 bits (121), Expect = 3.193e-61
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:  409 KQPKQMNVPVPERCTDPTAENFDPTARNDE 498
            K  +Q+N+PVPE CTDP AENFDPTAR+D+
Sbjct:  438 KGAQQVNLPVPEGCTDPVAENFDPTARSDD 467          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.311e-59
Identity = 98/139 (70.50%), Postives = 118/139 (84.89%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYGKAAQ 419
            FYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQ
Sbjct:  293 FYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQ 431          

HSP 2 Score: 41.5874 bits (96), Expect = 1.311e-59
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  409 KQPKQMNVPVPERCTDPTAENFDPTARNDE 498
            K  +Q  +PVPE CTD  A+N+DPTAR+D+
Sbjct:  428 KGAQQGTLPVPEGCTDQNAKNYDPTARSDD 457          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.552e-57
Identity = 97/139 (69.78%), Postives = 109/139 (78.42%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYGKAAQ 419
            FYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQ
Sbjct:  301 FYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQ 439          

HSP 2 Score: 42.3578 bits (98), Expect = 1.552e-57
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 1
Query:  409 KQPKQMNVPVPERCTDPTAENFDPTARNDE 498
            K  +Q+++PV + CTDP A+N+DPTAR+D+
Sbjct:  436 KAAQQVSLPVAQGCTDPEAKNYDPTARSDD 465          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.053e-56
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYG 407
            FYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLAD+YLSEAALG+AN+DA+ +G FYG
Sbjct:  303 FYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.224e-54
Identity = 101/136 (74.26%), Postives = 116/136 (85.29%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFYGK 410
            FYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLAD+YLSEAALG+AN DA+++G FYGK
Sbjct:  290 FYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 7.155e-53
Identity = 99/133 (74.44%), Postives = 112/133 (84.21%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNF 401
            FYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLAD+Y+SEAALG+AN DAI+ G F
Sbjct:  303 FYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.220e-52
Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNFY 404
            FYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  305 FYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY684116 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.082e-52
Identity = 98/133 (73.68%), Postives = 111/133 (83.46%), Query Frame = 3
Query:    3 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADEYLSEAALGEANADAIQSGNF 401
            FYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  307 FYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
The following BLAST results are available for this feature:
BLAST of EY684116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR6.499e-6276.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.105e-6171.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH3.193e-6172.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.311e-5970.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.552e-5769.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO4.053e-5678.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.224e-5474.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR7.155e-5374.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.220e-5272.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.082e-5273.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684116 ID=EY684116; Name=EY684116; organism=Citrus sinensis; type=EST; length=1014bp
AATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGT
ATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGA
CACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAG
TCTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGC
ATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCA
ACCAAGGATGACTATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGC
AAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACGAGTATTTGAGT
GAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTT
CTATGGCAAAGCAGCCCAAGCAAATGAATGTTCCAGTTCCTGAAAGATGT
ACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAATGATGAATG
GAAGCTGCCAATACAACGCTTTAAGGCCTTGGTTTCTAAAGGTTGATAAG
TGTCGCACTTTGCTTAGGATGAGAAATATCAAAAAAAATTGTTGCATTTT
TCTTTTCTTTGGTTAATTAAAAAGAATCCCCCTAATTTGGTGTATTATCT
CACCTCCTTTTATTCAATCTTTAAAAGGTGCTCCCTTCCTTCCTTTAATT
ACAATTTTCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGCCT
GCTTCTAAAAAGAAACAAGACTTTAAAATAGTCTTTGTTATGGCACATGC
CAATACTCCTTCTTTTAAACGTCACACTCAAAATTTACATTCCTCTTAGG
GCGATAGCATTAAATAAAAGGCTCCCGCATTGGGATGAAACAATCTAGCA
CTGATTGCGACCACAACAATAAACTATGCCATATTGCCTGCTTACAAAAC
ACCCCCTCTTTTGTCGCCCACGCCTGTGGGAACGAAAAAAAACTATCTGA
TATTAGAATAGAGA
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