EY684112

Overview
NameEY684112
Unique NameEY684112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1064
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684112 vs. ExPASy Swiss-Prot
Match: SYIC_HUMAN (Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.603e-12
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 2 
Query:   65 DIHVVREFKRPDGVTDKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGXXXXXXXXXXXHAVIIGEESFDGISNLSFNISLTR 460
            DI ++  F +  G T  + +A  D   LV+LD+ PD+S+ + G+AREV+NRIQKLRKK  L PTD + VY+++  E   ++  V+ S   +I   I              V+I E++   +      I+LTR
Sbjct:  944 DIRLMYTFDQATGGT-AQFEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGTYLN-SVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKT--QLKGSELEITLTR 1071
[Close]
BLAST of EY684112 vs. ExPASy Swiss-Prot
Match: SYIC_MOUSE (Isoleucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Iars PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.471e-11
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 2 
Query:   65 DIHVVREFKRPDGVTDKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGXXXXXXXXXXXHAVIIGEESFDGISNLSFNISLTRPALV 472
            DI ++  F +  G T  + +A  D   LV+LD+ PD+S+ + G+AREV+NRIQKLRKK  L PTD + VY+ +  E + ++  V+ S   ++   I              ++I E++   +      I+LT+ + V
Sbjct:  944 DIRLMYTFDQATGGT-AQFEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYNAKSEGRYLN-NVIESHTDFVFATIKAPLKPYPVPTSDNILIQEQT--QLKGSELEITLTKGSCV 1075
The following BLAST results are available for this feature:
BLAST of EY684112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYIC_HUMAN6.603e-1234.85Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sap... [more]
SYIC_MOUSE1.471e-1132.35Isoleucyl-tRNA synthetase, cytoplasmic OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-C03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684112 ID=EY684112; Name=EY684112; organism=Citrus sinensis; type=EST; length=1064bp
TATCGGCGCTGCGGTACGGTCGAGATTCCGGGTCGACCCACGCGTCCGCG
GACGCGTGGGGGCTGATATTCATGTTGTCCGGGAATTTAAACGCCCTGAT
GGTGTGACTGACAAGGAAATTGATGCTGCTGGAGATGGTGATGTTTTGGT
GATTTTGGATTTGCGTCCCGATGAGTCATTGTTTGAAGCTGGCGTTGCCC
GTGAGGTTGTTAATAGAATTCAGAAGTTACGGAAAAAAATTGCCCTTGAG
CCTACAGATGTTGTGGAGGTTTACTTTGAATCATTGGATGAAGACAAATC
GGTGTCCCAACAAGTCTTGAATTCACAGGAACACTACATCAGAGATGCAA
TTGGTTCTCCATTGCTTCCTTCCAGTACCCTGCCATCACATGCAGTTATC
ATTGGGGAGGAGAGTTTCGACGGCATATCAAATTTGTCCTTTAATATTAG
CTTGACGAGACCAGCACTGGTGTTCAACTCCGATTCTATTCTTGCATTAT
ATTCAGGAAACACAATGGTTCCTGCAAGGCCTGCGGATGTACTTGCTATC
AAGAGATTCTTCCAATTTGAATTCCGAGTTTCAACTTTGGAAATTGGCAA
TAATAATTGGGTGATTGCCTTTGAAAATCACCCCTCCGGGGAATTTGGGT
GGTGGGAAAAAATGGTATTCTTTGGCGGTTGGTAAATTATTATGGGGGGG
GCAAAAAAACTGGGGGGACACTTCAATCCTTTCGTGGGGAGTTACTTGTG
TTTCATTCCAGGGGGTTAACCGTACAATACAAATTTATTATACAGCCTAG
ATGTTGGTAAAATGTAGAGAAAGGGGATTAATTTTTAAGCTGATATTTGA
GTTGAATAGTTGGCAGAAGCATAGTAGGAGGGTATTCTGATGGAGAACTG
GACAGGTGCATTTAGAAATACCAGAAGTTTAATCTTCAAATTTTACGTGG
AGTAACTATATATTTTACCTATCGGACCGAGGGATGTCACACGTTTTGTA
GTGCTTTGATGTAAATACACCTTCTATCACACCCAGATTCCGACCAGATG
TCTAATTGCGTGAA
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