EY684099

Overview
NameEY684099
Unique NameEY684099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 2.705e-93
Identity = 178/240 (74.17%), Postives = 190/240 (79.17%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM FVEG R+                 AFDPLGLA+ P      LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRV-GGGPLGEGLDPIYPGGAFDPLGLADDPDAFA-ELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 237          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.136e-91
Identity = 177/240 (73.75%), Postives = 188/240 (78.33%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLM FVEG R+                 AFDPLGLA+ P+     LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRV-GGGPLGEGLDKIYPGGAFDPLGLADDPEAFA-ELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 237          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.306e-91
Identity = 174/240 (72.50%), Postives = 189/240 (78.75%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLM  +EG R+                 AFDPLGLA+ P+     LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRV-GGGPLGEGLDKIYPGGAFDPLGLADDPEAFA-ELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 237          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.641e-90
Identity = 174/240 (72.50%), Postives = 186/240 (77.50%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLM FVEG R+                 AFDPLGLA+ P+     LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV-GGGPLGEGLDKIYPGGAFDPLGLADDPEAFA-ELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 237          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 6.235e-90
Identity = 163/205 (79.51%), Postives = 175/205 (85.37%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQ 659
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLM  VEG R+                 AFDPLGLAE P+
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRV-GGGPLGEGLDQLYPGGAFDPLGLAEDPE 203          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 9.003e-89
Identity = 171/240 (71.25%), Postives = 189/240 (78.75%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLM  +EG R+                 AFDPLGLA+ P+     LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRV-GGGPLGEGLDPLYPGGAFDPLGLADDPEAFA-ELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 236          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 9.003e-89
Identity = 171/240 (71.25%), Postives = 184/240 (76.67%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLM FVEG R+                 AFDPLGLA+ P      LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRV-GGGPLGEGLDPLYPGGAFDPLGLADDPDSFA-ELKVKELKNGRLAM-FSMFGFFVQAIVTGKG 237          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.217e-85
Identity = 170/242 (70.25%), Postives = 186/242 (76.86%), Query Frame = 3
Query:   45 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MAT SAIQ S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLM  +EG R+                 AFDPLGLA+ P+  C  LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRV-GGGTLGEGLDPLLPGGAFDPLGLADDPE-ACAELKVKEIKNGRLAM-FSMFGFFVQAIVTGKG 238          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.039e-85
Identity = 171/240 (71.25%), Postives = 185/240 (77.08%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLM FVEG R+                 AFDPLGLA+ P      LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV-GGGPLGEGLDKVYPGGAFDPLGLADDPDTFA-ELKVKELKNGRLAM-FSMFGFFVQAIVTGKG 235          
BLAST of EY684099 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.039e-85
Identity = 171/240 (71.25%), Postives = 185/240 (77.08%), Query Frame = 3
Query:   45 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMVFVEG*RIXXXXXXXXXXXXXXXXXAFDPLGLAERPQPICLNLKSRNSKIGANGISFPWWDSLVRAIGPWKG 764
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLM FVEG R+                 AFDPLGLA+ P      LK +  K G   + F  +   V+AI   KG
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV-GGGPLGEGLDKVYPGGAFDPLGLADDPDTFA-ELKVKELKNGRLAM-FSMFGFFVQAIVTGKG 235          
The following BLAST results are available for this feature:
BLAST of EY684099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_GOSHI2.705e-9374.17Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP1.136e-9173.75Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC3.306e-9172.50Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC1.641e-9072.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_SILPR6.235e-9079.51Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI9.003e-8971.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA9.003e-8971.25Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PINTH1.217e-8570.25Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ6.039e-8571.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.039e-8571.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-A12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684099 ID=EY684099; Name=EY684099; organism=Citrus sinensis; type=EST; length=906bp
AAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCA
ACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCA
ATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTC
AAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATT
CATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTAATGGT
TTTTGTTGAAGGATAAAGAATTGGTGGCGGTCCTCTTGGTAAAGGACTTT
GACCCACTTTACCCCTGGGGGGGGCTTTTGACCCACTTGGTTTGGCTGAA
AGACCCCAACCAATTTGCCTAAATTTAAAGTCAAGGAACTCAAAAATTGG
GGCGAACGGGATAAGTTTCCCATGGTGGGATTCTTTGGTTCGGGCTATTG
GTCCCTGGAAAGGGGTCCAATTTGAAAACCCCAACAACCCCTATGCGGGA
TTCCGGGGGCAAACAGACCGTGGGGGCTTTAGCCCCAAACTTTTGTCTCC
CCGGAAAAAAAAAAAAACTCTCGAAAGCTAAAAGGGGGTTCTTTTTTCCC
CTCTGT
back to top