EY684057

Overview
NameEY684057
Unique NameEY684057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684057 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 71/187 (37.97%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   13 LNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPASIXXXXXXXXXXXXDC--NKPGENSPTHKWVEIPSHL*IYEDASDLKVRGKPGDNK 567
            LNL GC+ L  +P  + ++S++ L LSGCSKL  FP+I  N++   +L + GT I E+P SI+ L  L  LDL N ++ KNLP +I  LK L +L LSGC  L++FP+    M+ L  L L  T I E+P+SI            D   N P   +P     E+     +  ++S L++ G P DN+
Sbjct: 1310 LNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVK---ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLFVDSRRNSPVVTNPNANSTEL-----MPSESSKLEILGTPADNE 1488          
BLAST of EY684057 vs. ExPASy Swiss-Prot
Match: DRL25_ARATH (Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.154e-13
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    7 RPLNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVP 402
            + L +  C+ L TLP    + +++   +SGC++L+       N+ CL K+ L  T +GELP  I  LS L  L L NC   K LP  +  L  L    +SGC+ L K  E  ESM  L E+ L GT++   P
Sbjct:  775 KELIIRKCSKLKTLPNLEKLTNLEIFDVSGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALP-NLEKLTHLVIFDVSGCTNLDKIEESFESMSYLCEVNLSGTNLKTFP 905          
BLAST of EY684057 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   13 LNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSI-ELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPASI 411
            L L  C SL   P  + ++S++ L L  C  L+K P+I G M+   ++ + G+ I ELP SI +  + +  L L N KN   LP +I  LK L SL +SGCSKL+  PE +  +++L       T I   P+SI
Sbjct:  671 LYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSI 803          
The following BLAST results are available for this feature:
BLAST of EY684057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRK19_ARATH7.891e-2437.97Probable WRKY transcription factor 19 OS=Arabidops... [more]
DRL25_ARATH2.154e-1336.36Putative disease resistance protein At4g19050 OS=A... [more]
TMVRN_NICGU1.396e-1237.31TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-F02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684057 ID=EY684057; Name=EY684057; organism=Citrus sinensis; type=EST; length=913bp
CCCACGCGTCCGCTGAACTTGACAGGTTGTACAAGTCTTGCAACTCTTCC
AGGCAAGATTTTTATGAAATCTGTTAAAAAACTTGTTCTTTCTGGTTGCT
CGAAATTGAAGAAATTTCCCAAAATTGTGGGAAATATGGAGTGTTTGTCG
AAGCTTTTGTTGGATGGAACAGCTATTGGAGAACTGCCACTATCTATTGA
ACTTCTATCTAAACTTGTCTCATTGGATCTTAATAATTGCAAGAATTTCA
AGAATCTTCCGGTTACCATAAGCAGTTTAAAATGTCTAAGAAGTCTGGTG
CTCTCTGGTTGCTCGAAACTGAAGAAGTTTCCAGAGATTGTGGAAAGTAT
GGAAGATCTGTCGGAGCTCTTTTTAGATGGAACTTCTATTACAGAAGTGC
CGGCATCTATATAACTTTTGACTGGACTCAACGTGTTGAATTTGAATGAC
TGCAACAAACCTGGTGAGAATTCCCCAACACATAAATGGGTTGAAATCCC
CTCCCACCTCTAAATCTATGAGGATGCTTCAGACTTGAAAGTGCGCGGAA
AACCTGGGGACAATAAAAAACATAGAACAACTTCACATCATGGGCCAAAC
ACCTCCGCCCCGCCCCCGCCGCCTTCTATAACCACACTAACTACCAGGTA
CCAGTTATTGGGAGACACGACGCACGGCAATCAAGCACATCACCCGTCCG
AGCGAGCTCTCCACTCCACACAGCTCCACTCGGCAAAACCTCTGGATGTC
CATCCCCCCCGCACACACAAACATACCCCTCGCCGCTGAACAACACACCG
AGTCTCCTCAAAAGCAAATAAACTACAAAATTCAAGCAAATTCGACTAAA
CCCAAACCGAGCACTCGATCCCGAACTCACAGCCAGAAGGGTCAATCCCC
CTCCCCACCCCAA
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